top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr21|44094062|44098534|+|2|circRNA|TRAPPC10|ENST00000291574.8|20,21 | circTRAPPC10(20,21) | TRAPPC10 | MEYCRTGSLCSLEVLITRLSDLLEVDKDEALTESDEHFSTKLMYEAHLQQAVGVLRLGTQVDRRASPFSALPVLCWIFPSF | LGTQVDR | No | Alternative | Junction | 7 | 1 | ATG | TGA | TransCirc | No |
chr21|44504779|44568005|-|10|circRNA|TSPEAR|ENST00000323084.8|11,10,9,8,7,6,5,4,3,2 | circTSPEAR(11,10,9,8,7,6,5,4,3,2) | TSPEAR | LGVFLGGRRLFPGGGQLLRWAYLLGEQYYLQTCAPWTSWRKWSLLMAPQAGSG | LGVFLGGR | No | Alternative | Junction | 8 | 1 | CTG | TAG | NA | No |
chr21|44504779|44568005|-|10|circRNA|TSPEAR|ENST00000323084.8|11,10,9,8,7,6,5,4,3,2 | circTSPEAR(11,10,9,8,7,6,5,4,3,2) | TSPEAR | LGVFLGGRRLFPGGGQLLRWAYLLGEQYYLQTCAPWTSWRKWSLLMAPQAGSG | RLFPGGGQLLR | No | Alternative | Junction | 11 | 1 | CTG | TAG | NA | No |
chr21|45128401|45185091|+|7|circRNA|ADARB1|NM_001112|2,3,4,5,6,7,8 | circADARB1(2,3,4,5,6,7,8) | ADARB1 | LVRGRFQCAPMRASKRGTGCCKGSGCSPCPAVTRLHEWSLSGWHGELKGQLKETHWPSAEFCLLQSC | GSGCSPCPAVTRLHEWSLSGWHGELK | No | Junction | Junction | 26 | 1 | CTG | TGA | NA | No |
chr21|45128401|45185091|+|7|circRNA|ADARB1|NM_001112|2,3,4,5,6,7,8 | circADARB1(2,3,4,5,6,7,8) | ADARB1 | LVRGRFQCAPMRASKRGTGCCKGSGCSPCPAVTRLHEWSLSGWHGELKGQLKETHWPSAEFCLLQSC | LHEWSLSGWHGELKGQLK | No | Junction | Junction | 18 | 1 | CTG | TGA | NA | No |
Page 1 of 1
bottom of page