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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr21|41237512|41241939|+|2|circRNA|BACE2|ENST00000487994.5|2,3 | circBACE2(2,3) | BACE2 | LETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGLAHTAPRALTSQ | LETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGLAHTAPR | No | Junction | Junction | 44 | 1 | CTG | TGA | TransCirc | No |
chr21|41237512|41257326|+|6|circRNA|BACE2|ENST00000330333.10|3,4,5,6,7,8 | circBACE2(3,4,5,6,7,8) | BACE2 | MMGAGLNYECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPCAGLAHTAPRALTSQ | RVGFAASPCAGLAHTAPR | No | Junction | Junction | 18 | 1 | ATG | TGA | TransCirc | No |
chr21|41237512|41257326|+|6|circRNA|BACE2|ENST00000330333.10|3,4,5,6,7,8 | circBACE2(3,4,5,6,7,8) | BACE2 | MMGAGLNYECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPCAGLAHTAPRALTSQ | VGFAASPCAGLAHTAPRALTSQ | No | Junction | Junction | 22 | 1 | ATG | TGA | TransCirc | No |
chr21|41488393|41498189|-|4|circRNA|TMPRSS2|NM_001135099|5,4,3,2 | circTMPRSS2(5,4,3,2) | TMPRSS2 | MACHTAPAGRTRIGVVILNIPDTYHYSMLLITARWL | IGVVILNIPDTYHYSMLLITAR | No | Junction | Junction | 22 | 1 | ATG | TGA | TransCirc | No |
chr21|41488532|41489506|-|1|ciRNA|TMPRSS2|NM_001135099|4 | ciTMPRSS2(4) | TMPRSS2 | LFSYEIDTSWGKHLECTQCFGVLGATQHCEHRFFYLGATPSYLYLTAQQWLLGTRPTPPCPTSCNCSLSLPISLGWCRPMCHCGSFKLPVWQRGRVSAVQTQTLRGSFPLPPRK | VSAVQTQTLRGSFPLPPR | No | Alternative | Alternative | 18 | 1 | TTG | TAA | NA | No |
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