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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr21|33819240|33836632|+|6|circRNA|ITSN1|ENST00000399353.5|23,24,25,26,27,28 | circITSN1(23,24,25,26,27,28) | ITSN1 | LGCTTTPRRMTMSWPSTRARSSTSSTRRTLTGGKEKSMDKWGSSHPIM | RMTMSWPSTR | No | Alternative | Alternative | 10 | 1 | TTG | TGA | TransCirc | No |
chr21|33856735|33886460|+|10|circRNA|ITSN1|ENST00000381318.7|30,31,32,33,34,35,36,37,38,39 | circITSN1(30,31,32,33,34,35,36,37,38,39) | ITSN1 | LPVLHPRPGAGSPLHHCVREGPVLTRWVFRLTSLGYVDPN | EGPVLTR | No | Alternative | Junction | 7 | 2 | CTG | TGA | TransCirc | No |
chr21|34385477|34399899|+|2|circRNA|SMIM11|ENST00000481710.5|3,4 | circSMIM11(3,4) | SMIM11 | LGPPTPLGGSGWSFPSAAASHSSSTTLPTRKEGQSGGGSLAWRPSGQYLAHGKLDPCGLLWFLSTCPCCCISWQQKH | KEGQSGGGSLAWRPSGQYLAHGK | No | Alternative | Junction | 23 | 2 | CTG | TAA | NA | No |
chr21|36245047|36248568|+|3|circRNA|DOPEY2|ENST00000399151.3|19,20,21 | circDOPEY2(19,20,21) | DOPEY2 | MAAGDPANLRNARNAILEELPRTVNTMALLWNVLRKEETQKRPVDLLGATKGSSSVYFKTTKMTCTVGLTGRKPLSERHAQCPSLRRAALKSTCL | TTKMTCTVGLTGR | No | Junction | Junction | 13 | 1 | ATG | TGA | TransCirc | No |
chr21|36245047|36248568|+|3|circRNA|DOPEY2|ENST00000399151.3|19,20,21 | circDOPEY2(19,20,21) | DOPEY2 | MPSRCWRLCSKPTLRNSSRLCPGLAWIPAPPRTSTSSPTSSLATRRPSLARVSTESSRPRSPTCAPTLCSWSCSPTSA | LCPGLAWIPAPPR | No | Alternative | Alternative | 13 | 1 | ATG | TGA | TransCirc | No |
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