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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|6425987|6436533|-|3|circRNA|DAGLB|NM_001142936|5,4,3 | circDAGLB(5,4,3) | DAGLB | LVGGDQLNCHFGSILHTTGLQYRDFIHVSFHDKERFVTLDRGSLCLSCFTSAWRCFFQRWSGPLWGLPGWQMVFSATGQL | DFIHVSFHDKER | No | Junction | Junction | 12 | 2 | TTG | TAA | TransCirc | No |
chr7|6432836|6436533|-|2|circRNA|DAGLB|NM_001142936|4,3 | circDAGLB(4,3) | DAGLB | LRRASPCFISNRTISGTTKSLPRWSAMPQGAPRNDL | SLPRWSAMPQGAPR | No | Alternative | Junction | 14 | 2 | TTG | TAA | TransCirc | No |
chr7|6432836|6436533|-|2|circRNA|DAGLB|NM_001142936|4,3 | circDAGLB(4,3) | DAGLB | LRRASPCFISNRTISGTTKSLPRWSAMPQGAPRNDL | WSAMPQGAPR | No | Alternative | Junction | 10 | 2 | TTG | TAA | TransCirc | No |
chr7|6578565|6585260|+|6|circRNA|ZDHHC4|ENST00000396707.6|3,4,5,6,7,8 | circZDHHC4(3,4,5,6,7,8) | ZDHHC4 | LTLTASAATVAIVSTTFLVHLVVMSDLYQETYIDDLGHLHVMDTVFLIQPDPGSWKNHVRQLLVMPGTHCCPRGAAV | QLLVMPGTHCCPRGAAV | No | Alternative | Junction | 17 | 3 | TTG | TGA | TransCirc | No |
chr7|66712166|66805396|+|8|circRNA|RABGEF1|NM_001287060|2,3,4,5,6,7,8,9 | circRABGEF1(2,3,4,5,6,7,8,9) | RABGEF1 | LKWIPSVCLETSWPASPSAASTSSMPSRSPRMSRRQRMTSSPPSSTLF | MTSSPPSSTLF | Yes | Alternative | Alternative | 11 | 1 | TTG | TGA | TransCirc | No |
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