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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|111977131|112004131|-|7|circRNA|DOCK4|NM_014705|8,7,6,5,4,3,2 | circDOCK4(8,7,6,5,4,3,2) | DOCK4 | MEHRHRKKDTPVQASSHHLFVQMKSLMCSNLGEELEVIFSLFDSKENRPISYCQFPRNRSIWPVIGNWRYSSDPGEV | ENRPISYCQFPR | No | Junction | Junction | 12 | 1 | ATG | TGA | TransCirc | No |
chr7|111977131|112004131|-|7|circRNA|DOCK4|NM_014705|8,7,6,5,4,3,2 | circDOCK4(8,7,6,5,4,3,2) | DOCK4 | MEHRHRKKDTPVQASSHHLFVQMKSLMCSNLGEELEVIFSLFDSKENRPISYCQFPRNRSIWPVIGNWRYSSDPGEV | ENRPISYCQFPRNR | No | Junction | Junction | 14 | 1 | ATG | TGA | TransCirc | No |
chr7|112455762|112459018|+|4|circRNA|IFRD1|ENST00000005558.8|3,4,5,6 | circIFRD1(3,4,5,6) | IFRD1 | LGPGIESEEILKTLGPILKKIICDGSASMQARQTVASIEMFSLLVMKMHQLKQ | QTVASIEMFSLLVMK | No | Junction | Junction | 15 | 3 | CTG | TGA | TransCirc | No |
chr7|112455762|112468115|+|8|circRNA|IFRD1|ENST00000005558.8|3,4,5,6,7,8,9,10 | circIFRD1(3,4,5,6,7,8,9,10) | IFRD1 | MESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEVASIEMFSLLVMKMHQLKQ | AVEVASIEMFSLLVMK | No | Junction | Junction | 16 | 1 | ATG | TGA | TransCirc | No |
chr7|112775175|112784953|-|2|circRNA|TMEM168|NM_001287497|4,3 | circTMEM168(4,3) | TMEM168 | MLRSIRKMGKNSKFLNFGNFYSWSFCSWNRQHTLLLFFNGSSKFKSLQSLVWILAWPPMFS | QHTLLLFFNGSSK | No | Alternative | Alternative | 13 | 1 | ATG | TGA | TransCirc | No |
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