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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr21|29024777|29025294|+|1|ciRNA|USP16|NM_001001992|1 | ciUSP16(1) | USP16 | MFCQFQKLANEMPLLAAFSTPWTQRFPRGIGAVRRGGEGRCGRRRANGWVARGRDFPMGWSWICSRVHTAGRKSRICHLSN | ANGWVAR | No | Alternative | Alternative | 7 | 2 | ATG | TGA | NA | No |
chr21|29024777|29025294|+|1|ciRNA|USP16|NM_001001992|1 | ciUSP16(1) | USP16 | MFCQFQKLANEMPLLAAFSTPWTQRFPRGIGAVRRGGEGRCGRRRANGWVARGRDFPMGWSWICSRVHTAGRKSRICHLSN | ANGWVARGR | No | Alternative | Alternative | 9 | 2 | ATG | TGA | NA | No |
chr21|29305203|29329693|+|4|circRNA|BACH1|NR_027655|1,2,3,4 | circBACH1(1,2,3,4) | BACH1 | MIFEEEVKTELLHSAVARENLTVYRILNQKLRSCKRLLK | MIFEEEVK | No | Alternative | Junction | 8 | 2 | ATG | TAG | riboCIRC | No |
chr21|29321220|29321514|+|1|circRNA|BACH1|NM_001186|2 | circBACH1(2) | BACH1 | LLCRMSLSENSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVDDN | LLCRMSLSENSVFAYESSVHSTNVLLSLNDQR | No | Alternative | Junction | 32 | 1 | TTG | TAG | NA | No |
chr21|29321220|29327393|+|2|circRNA|BACH1|NM_001186|2,3 | circBACH1(2,3) | BACH1 | LMKWRNFWKIKMFRLLSVNSAGIKEMQKPHLLYKTVPVRHMSPCA | LLSVNSAGIK | No | Alternative | Alternative | 10 | 2 | CTG | TAG | NA | No |
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