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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20|63752685|63790790|-|3|circRNA|ZBTB46|ENST00000245663.8|4,3,2 | circZBTB46(4,3,2) | ZBTB46 | LQLLGHAPVHPQATHALAHGRAALPLRDLREEVHAARAHEAPHAESVEEATPGLPNEQPKGRYGNHVPLPAPAAGAQRAEAARRPVRRLRGRGGQGLQGAQERPAGQQPLLQDALLPGAEDVGAGHGHAPGHRHGPGLQGHHRLHVLSAPGAHQQERHRGDVSRQLPADDGHRASLPRLHQGGAGHQHQVGRLR | ASLPRLHQGGAGHQHQVGR | No | Alternative | Junction | 19 | 2 | CTG | TGA | riboCIRC,TransCirc | No |
chr20|63775677|63775962|-|1|circRNA|ZBTB46|ENST00000245663.8|3 | circZBTB46(3) | ZBTB46 | MRTCPSPKPAAPTAEERGPSSMHRWRRVSWEEKPAIWALPSPQRRTTPCIRPPRWPTCARRS | RTTPCIRPPR | No | Alternative | Alternative | 10 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr20|63775677|63775962|-|1|circRNA|ZBTB46|ENST00000245663.8|3 | circZBTB46(3) | ZBTB46 | MRTCPSPKPAAPTAEERGPSSMHRWRRVSWEEKPAIWALPSPQRRTTPCIRPPRWPTCARRS | TCPSPKPAAPTAEERGPSSMHR | No | Alternative | Alternative | 22 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr20|63945650|63946643|-|4|circRNA|UCKL1|NM_001193379|5,4,3,2 | circUCKL1(5,4,3,2) | UCKL1 | LYGANVIIFEGIMAFADKTLLEQQCRVPGQAPATCGHWALSPEADHQPVQVRASPAAYKQAYHLHRRAAALVQ | ASPAAYKQAYHLHR | No | Alternative | Junction | 14 | 1 | CTG | TGA | riboCIRC,TransCirc | No |
chr20|63983046|63985025|+|2|circRNA|PRPF6|NM_012469|2,3 | circPRPF6(2,3) | PRPF6 | MAMLGASSQVDPTRKMMRKQMLSMQPWIKGWMKEEKKDAPLASPRGQTLGPPVMQMTLWMIAMHPQAREPLGTR | MAMLGASSQVDPTR | No | Alternative | Junction | 14 | 2 | ATG | TGA | TransCirc | No |
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