top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20|47757188|47757463|-|1|circRNA|SULF2|ENST00000359930.8|2 | circSULF2(2) | SULF2 | LRLPHPKRSTRSAKKEDGPPEPRAVLAVRNCVLPAGWKLGLPVAPPPERQVSEGPQEHPPQHHPGADGRPGCGAGSASEEGRGKRNKATDAT | LGLPVAPPPER | No | Alternative | Junction | 11 | 1 | TTG | TGA | TransCirc | No |
chr20|4873935|4874696|-|2|circRNA|SLC23A2|ENST00000338244.5|11,10 | circSLC23A2(11,10) | SLC23A2 | LAALLHLHGDRCLPSRQHKVWLLCSHRCQARRASGSPVV | VWLLCSHR | No | Alternative | Alternative | 8 | 3 | CTG | TAA | TransCirc | No |
chr20|48953555|48963898|+|2|circRNA|ARFGEF2|NM_006420|6,7 | circARFGEF2(6,7) | ARFGEF2 | LEDVVTSAIKVAGGQRTGKTNPVKTPVPCDPSCSSIPKVRSFEAQSGTKQTNNSRKNRFNQR | QTNNSRK | Yes | Alternative | Junction | 7 | 3 | TTG | TGA | TransCirc | No |
chr20|48953555|48963898|+|2|circRNA|ARFGEF2|NM_006420|6,7 | circARFGEF2(6,7) | ARFGEF2 | LEDVVTSAIKVAGGQRTGKTNPVKTPVPCDPSCSSIPKVRSFEAQSGTKQTNNSRKNRFNQR | TPVPCDPSCSSIPK | Yes | Alternative | Junction | 14 | 3 | TTG | TGA | TransCirc | No |
chr20|48953555|48963898|+|2|circRNA|ARFGEF2|NM_006420|6,7 | circARFGEF2(6,7) | ARFGEF2 | LEDVVTSAIKVAGGQRTGKTNPVKTPVPCDPSCSSIPKVRSFEAQSGTKQTNNSRKNRFNQR | VRSFEAQSGTK | Yes | Alternative | Junction | 11 | 3 | TTG | TGA | TransCirc | No |
Page 1 of 1
bottom of page