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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20|43710062|43711479|+|1|ciRNA|MYBL2|ENST00000396863.8|9 | ciMYBL2(9) | MYBL2 | MSRGEALVSAPFLLQWRFGSSVLKYLHALQTGVRANHMTLAAVIKVCGGFSDDL | FGSSVLK | No | Alternative | Alternative | 7 | 1 | ATG | TGA | NA | No |
chr20|44503814|44506996|-|3|circRNA|SERINC3|NM_198941|8,7,6 | circSERINC3(8,7,6) | SERINC3 | LMSFITRITAPTLAPGNSTAVVPTPTPPSKSGSLLDSDNFIGLFVFVLCLLYSSFTVFHKRLLYPVNHLCRAALYILHQTRWLHRKQVLHQY | AALYILHQTRWLHR | No | Alternative | Junction | 14 | 3 | CTG | TAA | riboCIRC,TransCirc | No |
chr20|44916755|44919277|+|3|circRNA|PABPC1L|ENST00000217074.8|3,4,5 | circPABPC1L(3,4,5) | PABPC1L | LALSTLRSMRKPRRWRVTSMAPGVSALSILRPMRPHSRPSTP | LALSTLRSMR | No | Alternative | Junction | 10 | 1 | TTG | TGA | NA | No |
chr20|45420693|45421381|+|1|ciRNA|PIGT|NM_001184728|7 | ciPIGT(7) | PIGT | LRGPGLGSKGARCSSRKHFNTSNLLSSSLVGWGRQG | GPGLGSKGAR | No | Alternative | Alternative | 10 | 1 | CTG | TGA | NA | No |
chr20|46063359|46079453|-|6|circRNA|NCOA5|ENST00000290231.10|7,6,5,4,3,2 | circNCOA5(7,6,5,4,3,2) | NCOA5 | MPWCWWPEIMSVTRMSAGRRNVRRLPDRQPRWPMKPSCRKEREEALRRECVGATLQPSRASSTCWQTTGTSLLKRLTRSSTTCESGRSG | RECVGATLQPSR | Yes | Alternative | Alternative | 12 | 1 | ATG | TGA | TransCirc | No |
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