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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|584507|711527|-|7|circRNA|PRKAR1B|NM_002735|8,7,6,5,4,3,2 | circPRKAR1B(8,7,6,5,4,3,2) | PRKAR1B | LRKRKMYEEFLSKVSILGRKQPPSPWPPRPPAPRRRTRA | VSILGRK | No | Alternative | Junction | 7 | 1 | CTG | TGA | TransCirc | No |
chr7|5982823|5987620|-|2|circRNA|PMS2|NM_000535|12,11 | circPMS2(12,11) | PMS2 | LRGSASQTRAVTAAASMRPAPQGTGARRNMWTLRRKRLKLTTLFQMWTAIQTRKIPDVNFEFCLSQLISQPQTQSVLKKKKFFPVLTFVKS | AVTAAASMRPAPQGTGAR | No | Alternative | Alternative | 18 | 1 | CTG | TAG | NA | No |
chr7|5982823|5987620|-|2|circRNA|PMS2|NM_000535|12,11 | circPMS2(12,11) | PMS2 | LRGSASQTRAVTAAASMRPAPQGTGARRNMWTLRRKRLKLTTLFQMWTAIQTRKIPDVNFEFCLSQLISQPQTQSVLKKKKFFPVLTFVKS | AVTAAASMRPAPQGTGARR | No | Alternative | Alternative | 19 | 1 | CTG | TAG | NA | No |
chr7|6111124|6115523|+|2|circRNA|USP42|ENST00000306177.9|2,3 | circUSP42(2,3) | USP42 | MASLLHRKFFSHLRRFVLSGNKLIELELGSRIWAIPVLPMQHCSV | FVLSGNK | No | Alternative | Alternative | 7 | 1 | ATG | TAA | TransCirc | No |
chr7|6147738|6155195|+|4|circRNA|USP42|ENST00000306177.9|12,13,14,15 | circUSP42(12,13,14,15) | USP42 | LPPGARPPGPPRPGAPPRPRRQAQPWRAPLSGQVQSPPLPTPERGGAGLGQTPLHRGRAWLGPGEVLPRQAALGQVPVLP | AWLGPGEVLPR | No | Alternative | Alternative | 11 | 1 | CTG | TGA | TransCirc | No |
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