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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20|35739019|35740524|-|1|ciRNA|RBM39|NR_040722|3 | ciRBM39(3) | RBM39 | LAASMATWGLGRNRAMVLTKGTIAHGIKLKTGLHVLWKLYLTTSTL | LAASMATWGLGR | No | Alternative | Alternative | 12 | 1 | CTG | TAA | NA | No |
chr20|3578581|3604262|+|10|circRNA|ATRN|NM_001207047|15,16,17,18,19,20,21,22,23,24 | circATRN(15,16,17,18,19,20,21,22,23,24) | ATRN | LEPRLEKRCLLFQKPTLRSTKIVSLMRSLIFATTQISLSLFMSVISPGPSKFRKYLWHWLAFGWKLMFENYYCQGEL | SLIFATTQISLSLFMSVISPGPSK | No | Alternative | Junction | 24 | 1 | CTG | TGA | TransCirc | No |
chr20|35801490|35863400|+|5|circRNA|PHF20|ENST00000374012.7|2,3,4,5,6 | circPHF20(2,3,4,5,6).A | PHF20 | LKRGKCQRKVFPRTRRKTRKTFPKMTESILEMPKWIRNLKMTL | TFPKMTESILEMPK | No | Alternative | Alternative | 14 | 2 | CTG | TGA | riboCIRC | No |
chr20|35847349|35871829|+|6|circRNA|PHF20|ENST00000374012.7|4,5,6,7,8,9 | circPHF20(4,5,6,7,8,9) | PHF20 | LKSALEAGQVSSALTCHSFGDGSGAAGLELNCPSMGENTMKTEPTSPLVELQEISTVEGISNK | TEPTSPLVELQEISTVEGISNK | No | Junction | Junction | 22 | 3 | TTG | TGA | riboCIRC,TransCirc | No |
chr20|36496704|36500611|+|3|circRNA|DLGAP4|NM_014902|8,9,10 | circDLGAP4(8,9,10) | DLGAP4 | LYPSPQLHQHRCRSPAGPQDCPDQAQPLLWRQQRPCPRGVLAAPTRPLARDLLQLPSRAGTARGLPPRRLLVPKATAGRNRAAGRLVLPDGQGDQREQPL | AGTARGLPPR | No | Alternative | Alternative | 10 | 1 | CTG | TGA | TransCirc | No |
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