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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20|33366858|33395116|-|10|circRNA|CDK5RAP1|ENST00000473997.5|12,11,10,9,8,7,6,5,4,3 | circCDK5RAP1(12,11,10,9,8,7,6,5,4,3) | CDK5RAP1 | LKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGSTSRPMAAR | ANQTSVGCTQLVLVEGSTSRPMAAR | No | Junction | Junction | 25 | 1 | CTG | TGA | TransCirc | No |
chr20|33379460|33397084|-|7|circRNA|CDK5RAP1|ENST00000346416.6|8,7,6,5,4,3,2 | circCDK5RAP1(8,7,6,5,4,3,2) | CDK5RAP1 | LKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDETVGCLVPCTLYSVSSKCRGLWGGDHWPLCLGCR | CRGLWGGDHWPLCLGCR | No | Alternative | Junction | 17 | 1 | CTG | TGA | riboCIRC,TransCirc | No |
chr20|33379460|33397084|-|7|circRNA|CDK5RAP1|ENST00000346416.6|8,7,6,5,4,3,2 | circCDK5RAP1(8,7,6,5,4,3,2) | CDK5RAP1 | LKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDETVGCLVPCTLYSVSSKCRGLWGGDHWPLCLGCR | DFPDETVGCLVPCTLYSVSSKCR | No | Junction | Junction | 23 | 1 | CTG | TGA | riboCIRC,TransCirc | No |
chr20|33379460|33397084|-|7|circRNA|CDK5RAP1|ENST00000346416.6|8,7,6,5,4,3,2 | circCDK5RAP1(8,7,6,5,4,3,2) | CDK5RAP1 | LKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDETVGCLVPCTLYSVSSKCRGLWGGDHWPLCLGCR | GLWGGDHWPLCLGCR | No | Alternative | Junction | 15 | 1 | CTG | TGA | riboCIRC,TransCirc | No |
chr20|33611093|33611335|+|1|circRNA|CBFA2T2|ENST00000471007.1|3 | circCBFA2T2(3) | CBFA2T2 | LAMTSPLRLGRRCGLLFLHWCKQWHQPFSSYPEWCPITATEIQQWSCLLHIICTHKSAIASHLWCSTTQQVETLSYHSATVWQ | LAMTSPLR | No | Alternative | Junction | 8 | 1 | TTG | TGA | TransCirc | No |
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