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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr20|25020009|25023092|-|3|circRNA|ACSS1|ENST00000537502.5|6,5,4 | circACSS1(6,5,4) | ACSS1 | LFAPQRAWAVRTCSSCCTPQGAPECPRASSIPRQATCSMPP | QATCSMPP | No | Alternative | Alternative | 8 | 2 | CTG | TGA | TransCirc | No |
chr20|25020009|25023092|-|3|circRNA|ACSS1|ENST00000537502.5|6,5,4 | circACSS1(6,5,4) | ACSS1 | LKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLGSGNGQGGPCLRPREHGQ | TLGSGNGQGGPCLRPR | No | Junction | Junction | 16 | 3 | TTG | TGA | TransCirc | No |
chr20|25020009|25023092|-|3|circRNA|ACSS1|ENST00000537502.5|6,5,4 | circACSS1(6,5,4) | ACSS1 | LKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLGSGNGQGGPCLRPREHGQ | TLGSGNGQGGPCLRPREHGQ | No | Junction | Junction | 20 | 3 | TTG | TGA | TransCirc | No |
chr20|25209925|25211992|+|1|ciRNA|ENTPD6|ENST00000354989.9|3 | ciENTPD6(3) | ENTPD6 | LFNCRMCSSQFFSFECGRLSSQRKGALTVLPGHFMPFGMVRREKVCSARAQRRTRPHPAPSSDSTVPALTSPTWGSRGLGTGQKHKSCKLTKIII | GALTVLPGHFMPFGMVRR | No | Alternative | Alternative | 18 | 1 | CTG | TGA | NA | No |
chr20|25209925|25211992|+|1|ciRNA|ENTPD6|ENST00000354989.9|3 | ciENTPD6(3) | ENTPD6 | LGISCHLGWSEERRCAAREPRGERAPTRPHPLTPPCQRSLLQRGGPEVLVQVRSTNPANLQKSLFDSLLIQIFTLI | GERAPTRPHPLTPPCQR | No | Alternative | Alternative | 17 | 2 | CTG | TAG | NA | No |
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