top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|99421498|99439310|-|6|circRNA|REV1|ENST00000393445.7|11,10,9,8,7,6 | circREV1(11,10,9,8,7,6) | REV1 | LVDITEILAETKLTPDEFANAVRMEIKDQTKCAASVGIEITSLRRLKRKMKSKSMA | CAASVGIEITSLR | No | Junction | Junction | 13 | 2 | CTG | TGA | TransCirc | No |
chr2|99438600|99442469|-|2|circRNA|REV1|ENST00000393445.7|6,5 | circREV1(6,5) | REV1 | MNSWNEEDENNDFSFVDLEQTSPGRKQNGIPHPRGSTAIFNGHTPSSNGALKTQDCLVPMVNSVASRLSPAFSQEEDKAEKSSTDFRDCTLQQLQQSTRNTDALRNPHRTNSFSLSPLHSNTKINGAHHSTVQGPSSTKSTSSVSTFSKAAPSVPSKPSDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTDTASKLDDSSPTFHISCTPSSPVCRKVSALILYADLRILCQVQAI | KVSALILYADLR | No | Alternative | Junction | 12 | 2 | ATG | TAG | TransCirc | No |
chr20|1118752|1135306|+|4|circRNA|PSMF1|ENST00000333082.7|2,3,4,5 | circPSMF1(2,3,4,5) | PSMF1 | LLPPERWTHSGFLHTTHTPVGSLPDAEVAGAHGGPGGTVRIGSAGHHLQAGRARLLLALGSGDTRLLRLGCR | IGSAGHHLQAGRAR | No | Alternative | Junction | 14 | 3 | CTG | TGA | TransCirc | No |
chr20|13483226|13569586|-|5|circRNA|TASP1|NM_017714|11,10,9,8,7 | circTASP1(11,10,9,8,7) | TASP1 | LCAPYWLENVHMLYKLRMLTKPCWRLCKTSLSLFSWRRSLQMGSRSWNTLLPS | RSLQMGSR | No | Alternative | Junction | 8 | 1 | TTG | TAA | TransCirc | No |
chr20|13534021|13569586|-|3|circRNA|TASP1|NM_017714|9,8,7 | circTASP1(9,8,7) | TASP1 | LDTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQLFSWRRSLQMGSRSWNTLLPS | VGQLFSWR | No | Junction | Junction | 8 | 1 | TTG | TAA | TransCirc | No |
Page 1 of 1
bottom of page