top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|74003109|74048411|+|2|circRNA|TET3|NM_001287491|2,3 | circTET3(2,3) | TET3 | LAGRPKARLGGCPRPSSYCSPGRCPRSGGLFGCGRSCVLLWGP | SGGLFGCGRSCVLLWGP | No | Alternative | Alternative | 17 | 3 | TTG | TAG | riboCIRC,TransCirc | No |
chr2|74003109|74048411|+|2|circRNA|TET3|NM_001287491|2,3 | circTET3(2,3) | TET3 | LGTTAGDPGQGLRAALLAAKTLTHCRRPWPSRGMV | LGTTAGDPGQGLR | No | Alternative | Alternative | 13 | 2 | CTG | TGA | riboCIRC,TransCirc | No |
chr2|74003109|74048411|+|2|circRNA|TET3|NM_001287491|2,3 | circTET3(2,3) | TET3 | LPQAQLILLAWKMPTIWWPFRLWPKLCPLMGPLAPGSMKPSTVR | LCPLMGPLAPGSMKPSTVR | No | Alternative | Alternative | 19 | 2 | CTG | TGA | riboCIRC,TransCirc | No |
chr2|74046277|74048411|+|1|circRNA|TET3|NM_001287491|3 | circTET3(3) | TET3 | MDSGPVYHGDSRQLSASGVPVNGAREPAGPSLLGTGGPWRVDQKPDWEAAPGPAHTARLEDAHDLVAFSAVAEAVSSYGALSTRLYETFNREMSREAGNNSRGPRPGPEGCSAGSEDLDTLQTALALARHGMKPPNCNCDGPECPDYLEWLEGKIKSVVMEGGEERPRLPGPLPPGEAGLPAPSTRPLLSSEVPQISPQEGLPLSQSALSIAKEKNISLQTAIAIEALTQLSSALPQPSHSTPQASCPLPEALSPPAPFRSPQSYLRAPSWPVVPPEEHSSFAPDSSAFPPATPRTEFPEAWGTDTPPATPRSSWPMPRPSPDPMAELEQLLGSASDYIQSVFKRPEALPTKPKVKVEAPSSSPAPAPSPVLQREAPTPSSEPDTHQKAQTALQQHLHHKRSLFLEQVHDTSFPAPSEPSAPGWWPPPSSPVPRLPDRPPKEKKKKLPTPAGGPVGTEKAAPGIKPSVRKPIQIKKSRPREAQPLFPPVRQIVLEGLRSPASQEVQAHPPAPLPASQGSAVPLPPEPSLALFAPSPSRDSLLPPTQEMRSPSPMTALQPGSTGPLPPADDKLEELIRQFEAEFGDSFGLPGPPSVPIQDPENQQTCLPAPESPFATRSPKQIKIESSGAVTVLSTTCFHSEEGGQEATPTKAENPLTPTLSGFLESPLKYLDTPTKSLLDTPAKRAQAEFPTCDCVDRLRAQPS | AQAEFPTCDCVDRLR | No | Junction | Junction | 15 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr2|74210049|74211175|+|1|ciRNA|MTHFD2|ENST00000394053.6|5 | ciMTHFD2(5) | MTHFD2 | LLSGNTVLFSPCKNFQKPSCACLEVLTLLYFVFVEILLTDNSGSNLCREAAPSVT | EAAPSVT | No | Alternative | Alternative | 7 | 1 | TTG | TGA | NA | No |
Page 1 of 1
bottom of page