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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|69849651|69861347|+|3|circRNA|GMCL1|ENST00000282570.3|8,9,10 | circGMCL1(8,9,10) | GMCL1 | LCINSSGLLCCGQNRTVRWVDVPSTCAFLEWIFKTAFDRNRCLVF | LCINSSGLLCCGQNRTVR | No | Alternative | Junction | 18 | 1 | CTG | TAA | TransCirc | No |
chr2|70214348|70216994|-|5|circRNA|TIA1|ENST00000433529.6|12,11,10,9,8 | circTIA1(12,11,10,9,8) | TIA1 | LDIPNLMASGASGMEMHNKLASICLMVGKFLHMECMARHGTSKDLRC | LDIPNLMASGASGMEMHNK | No | Alternative | Junction | 19 | 2 | TTG | TGA | TransCirc | No |
chr2|71365428|71365706|+|1|circRNA|ZNF638|ENST00000410075.5|6 | circZNF638(6) | ZNF638 | LGMGQNLINRSILKLLIRDIHQHKSLKLAVEQNHQLNLQALQRVIQI | LGMGQNLINR | No | Alternative | Alternative | 10 | 1 | CTG | TAG | NA | No |
chr2|73088049|73089315|-|2|circRNA|RAB11FIP5|ENST00000258098.6|3,2 | circRAB11FIP5(3,2) | RAB11FIP5 | LHSPPSCSPIRGPTAMRPTRCEWLLLGPFWTFRATWMLPPALRSVSMGATFTMRSPRALCGTAAPSRARFHPLAPCKLSLPGSPRRGLVPQMTPGPEAVVATAAQRQCLDRRS | LHSPPSCSPIRGPTAMRPTR | No | Alternative | Alternative | 20 | 1 | CTG | TGA | NA | No |
chr2|73408621|73432291|+|6|circRNA|ALMS1|ENST00000613296.4|2,3,4,5,6,7 | circALMS1(2,3,4,5,6,7) | ALMS1 | MLRMSPDTVPKAPKHLKADCSIDLSCMATDSISRQ | ADCSIDLSCMATDSISR | No | Junction | Junction | 17 | 1 | ATG | TAG | TransCirc | No |
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