top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|61278164|61295290|-|11|circRNA|USP34|NM_014709|41,40,39,38,37,36,35,34,33,32,31 | circUSP34(41,40,39,38,37,36,35,34,33,32,31) | USP34 | LQQVLLNTNHPLNFQGKDRVMMDLIGKNFSKLRAPTSYCMLWKLLKHWENLIEE | DRVMMDLIGK | No | Junction | Junction | 10 | 3 | TTG | TAA | TransCirc | No |
chr2|61331275|61348480|-|6|circRNA|USP34|NM_014709|20,19,18,17,16,15 | circUSP34(20,19,18,17,16,15) | USP34 | LNMMKLFFDNLVYYIQTVREGRQKHALNPCREVLTKLPTVVKMEAVVLVAVVGIVMDLAMRLILATQASQLGALAVRYSQKTLQILKPSKRKMKTMIMVIILPKAVVVQIFGIES | AVVVQIFGIES | No | Alternative | Junction | 11 | 2 | CTG | TAG | NA | No |
chr2|63378385|63404657|-|3|circRNA|WDPCP|ENST00000409354.6|4,3,2 | circWDPCP(4,3,2) | WDPCP | LRQALEPSMLQQDHFWIPLYWNIEIKSANMQGDSSITCSGSEFCPHRMGPTGCSLWHQTALSGVHSGALRKCRQRAHG | QALEPSMLQQDHFWIPLYWNIEIK | No | Alternative | Junction | 24 | 1 | TTG | TGA | TransCirc | No |
chr2|63882465|63884093|+|2|circRNA|UGP2|ENST00000394417.6|4,5 | circUGP2(4,5) | UGP2 | LNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRFNPMKR | IYTFNQSRFNPMK | No | Junction | Junction | 13 | 1 | TTG | TAA | TransCirc | No |
chr2|64551442|64553409|+|1|circRNA|AFTPH|ENST00000238855.11|2 | circAFTPH(2) | AFTPH | LIIYQKNVNWQENLVEQALNLLQNLKMGKKVRLDILILCQIFRMTAMVFKTLMILQTSVQLVLAKL | LDILILCQIFR | No | Alternative | Alternative | 11 | 1 | CTG | TAG | TransCirc | No |
Page 1 of 1
bottom of page