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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|53866084|53928303|-|36|circRNA|PSME4|ENST00000404125.5|46,45,44,43,42,41,40,39,38,37,36,35,34,33,32,31,30,29,28,27,26,25,24,23,22,21,20,19,18,17,16,15,14,13,12,11 | circPSME4(46,45,44,43,42,41,40,39,38,37,36,35,34,33,32,31,30,29,28,27,26,25,24,23,22,21,20,19,18,17,16,15,14,13,12,11) | PSME4 | MTTGRNINSNSLMTNCLFSPIFLCHHAIMHRKNISCIRDINRTSPAHSYFKLCNWSSPQFGIRRQMVS | LCNWSSPQFGIR | No | Alternative | Junction | 12 | 2 | ATG | TGA | TransCirc | No |
chr2|54621399|54623596|+|3|circRNA|SPTBN1|ENST00000356805.8|8,9,10 | circSPTBN1(8,9,10) | SPTBN1 | LEVLLFTIQSKMRANNQKVYMPREGKLISDINKTSAWTILMRSP | LISDINKTSAWTILMR | No | Junction | Junction | 16 | 2 | TTG | TAA | TransCirc | No |
chr2|54816786|54829477|+|4|circRNA|EML6|ENST00000356458.6|3,4,5,6 | circEML6(3,4,5,6) | EML6 | MYACEEGFATGGRDGCIRLWDTDFKPITKIDLRETEQGYKAFSLCGVGCQKHSLHLGLEEGKTSGVSHRPF | AFSLCGVGCQKHSLHLGLEEGK | No | Alternative | Junction | 22 | 1 | ATG | TGA | TransCirc | No |
chr2|54816786|54829477|+|4|circRNA|EML6|ENST00000356458.6|3,4,5,6 | circEML6(3,4,5,6) | EML6 | MYACEEGFATGGRDGCIRLWDTDFKPITKIDLRETEQGYKAFSLCGVGCQKHSLHLGLEEGKTSGVSHRPF | HSLHLGLEEGK | No | Alternative | Junction | 11 | 1 | ATG | TGA | TransCirc | No |
chr2|54816786|54829477|+|4|circRNA|EML6|ENST00000356458.6|3,4,5,6 | circEML6(3,4,5,6) | EML6 | MYACEEGFATGGRDGCIRLWDTDFKPITKIDLRETEQGYKAFSLCGVGCQKHSLHLGLEEGKTSGVSHRPF | HSLHLGLEEGKTSGVSHRPF | No | Alternative | Junction | 20 | 1 | ATG | TGA | TransCirc | No |
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