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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|37049652|37058987|-|6|circRNA|HEATR5B|ENST00000233099.5|18,17,16,15,14,13 | circHEATR5B(18,17,16,15,14,13) | HEATR5B | LTLVMGPLDNPNPILRCAAGEALGRMAQVVGEATFIARMAQYSFDNHEELRCTLS | MAQVVGEATFIARMAQYSFDNHEELR | No | Junction | Junction | 26 | 1 | CTG | TGA | TransCirc | No |
chr2|37122505|37135546|-|3|circRNA|EIF2AK2|ENST00000233057.8|12,11,10 | circEIF2AK2(12,11,10) | EIF2AK2 | LFTTMAVGMDLIMILRPVMILLRAVIMILRTAKIVQDLWHPDLTFLT | AVIMILR | No | Alternative | Junction | 7 | 3 | TTG | TGA | TransCirc | No |
chr2|37269614|37317179|-|12|circRNA|PRKD3|ENST00000379066.5|13,12,11,10,9,8,7,6,5,4,3,2 | circPRKD3(13,12,11,10,9,8,7,6,5,4,3,2) | PRKD3 | LVVFLQTRLLFDGTDIKRNRTFGAFNSLIKLKSIGMSGLTEEIKKFSTKSKSAVIFFTAVILKTSS | LLFDGTDIKR | No | Alternative | Alternative | 10 | 3 | CTG | TAA | NA | No |
chr2|37279745|37286369|-|3|circRNA|PRKD3|ENST00000379066.5|8,7,6 | circPRKD3(8,7,6) | PRKD3 | MTQKSHHPQKIRCSSWIHLISMWKEMKKPLKQSVTCPPGTK | KPLKQSVTCPPGTK | No | Junction | Junction | 14 | 1 | ATG | TAA | TransCirc | No |
chr2|37282541|37293271|-|5|circRNA|PRKD3|ENST00000379066.5|7,6,5,4,3 | circPRKD3(7,6,5,4,3) | PRKD3 | LCIKSTKRLPWRGYFQWSFQSVDSLACMTKFFSFAMT | GYFQWSFQSVDSLACMTK | No | Junction | Junction | 18 | 2 | CTG | TGA | TransCirc | No |
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