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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|3387619|3401893|+|2|circRNA|TRAPPC12|ENST00000382110.6|2,3 | circTRAPPC12(2,3) | TRAPPC12 | LMLRFLGEKAAAKRQVLNADSVEQSFVGLKQLIGHGGRWRRRGDPGPGGPAPPSARASGGAGVALPGGNHRSWRR | GDPGPGGPAPPSAR | No | Alternative | Junction | 14 | 1 | TTG | TGA | TransCirc | No |
chr2|3387619|3401893|+|2|circRNA|TRAPPC12|ENST00000382110.6|2,3 | circTRAPPC12(2,3) | TRAPPC12 | LTPPTARATRATWAECGTKLSPEGKATQARSPRAPRVPAARPTATVPPRTRHPVAEGPRGRTRPARSQAAKPRARSRSLPLRSRSRCAPSSASARPQPPGTASSRRW | APRVPAARPTATVPPR | No | Alternative | Alternative | 16 | 3 | CTG | TGA | TransCirc | No |
chr2|3387619|3401893|+|2|circRNA|TRAPPC12|ENST00000382110.6|2,3 | circTRAPPC12(2,3) | TRAPPC12 | LTPPTARATRATWAECGTKLSPEGKATQARSPRAPRVPAARPTATVPPRTRHPVAEGPRGRTRPARSQAAKPRARSRSLPLRSRSRCAPSSASARPQPPGTASSRRW | HPVAEGPR | No | Alternative | Alternative | 8 | 3 | CTG | TGA | TransCirc | No |
chr2|3387619|3401893|+|2|circRNA|TRAPPC12|ENST00000382110.6|2,3 | circTRAPPC12(2,3) | TRAPPC12 | LTPPTARATRATWAECGTKLSPEGKATQARSPRAPRVPAARPTATVPPRTRHPVAEGPRGRTRPARSQAAKPRARSRSLPLRSRSRCAPSSASARPQPPGTASSRRW | HPVAEGPRGR | No | Alternative | Alternative | 10 | 3 | CTG | TGA | TransCirc | No |
chr2|3387619|3401893|+|2|circRNA|TRAPPC12|ENST00000382110.6|2,3 | circTRAPPC12(2,3) | TRAPPC12 | LTPPTARATRATWAECGTKLSPEGKATQARSPRAPRVPAARPTATVPPRTRHPVAEGPRGRTRPARSQAAKPRARSRSLPLRSRSRCAPSSASARPQPPGTASSRRW | VPAARPTATVPPRTR | No | Alternative | Alternative | 15 | 3 | CTG | TGA | TransCirc | No |
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