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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|241755044|241756014|+|1|circRNA|D2HGDH|ENST00000436747.5|11 | circD2HGDH(11) | D2HGDH | LTCAPASARTPSTWWAMATLISTMEVRSKQKPRKPQADLSEP | LTCAPASARTPSTWWAMATLISTMEVR | No | Junction | Junction | 27 | 2 | CTG | TAG | NA | No |
chr2|25274940|25314161|-|5|circRNA|DNMT3A|ENST00000264709.7|6,5,4,3,2 | circDNMT3A(6,5,4,3,2) | DNMT3A | LRGGLGWESSLRQRPMPRLTFQAGDPYYISKRKRDEWLARWKREVEPSKPPPTG | VEPSKPPPTG | No | Alternative | Junction | 10 | 1 | CTG | TGA | TransCirc | No |
chr2|25282440|25314161|-|3|circRNA|DNMT3A|ENST00000264709.7|4,3,2 | circDNMT3A(4,3,2) | DNMT3A | LLHPQGGPRSPCRSGWSHRSPHPQADRGTVHQRAQHRDLCLSFNSRLQRPR | LLHPQGGPR | No | Alternative | Junction | 9 | 3 | CTG | TAA | TransCirc | No |
chr2|25282440|25314161|-|3|circRNA|DNMT3A|ENST00000264709.7|4,3,2 | circDNMT3A(4,3,2) | DNMT3A | MAQDSGASELLPNGDLEKRSEPQPEEGSPAGGQKGGAPAEGEGAAETLPEASRAVENGCCTPKEGRGAPAEAGGAIEAPTHRLTEAPFTRGLNTGIYV | GAPAEAGGAIEAPTHR | No | Junction | Junction | 16 | 1 | ATG | TAA | TransCirc | No |
chr2|25282440|25314161|-|3|circRNA|DNMT3A|ENST00000264709.7|4,3,2 | circDNMT3A(4,3,2) | DNMT3A | MGTWRSGVSPSQRRGALLGGRRAGPQQRERVQLRPCLKPQEQWKMAAAPPRRAEEPLQKRVEPSKPPPTG | RAGPQQR | No | Alternative | Junction | 7 | 2 | ATG | TGA | TransCirc | No |
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