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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|241140520|241140753|-|1|circRNA|PASK|ENST00000234040.8|3 | circPASK(3) | PASK | LPRIFVQVNCTALLPLSTRTRPNRGAVCPAAPCCGDCPQGGPHLCFRPLCATLTRPSSRWMPRPQRRQMELLLSIITGCPEYLYK | WMPRPQRR | No | Junction | Junction | 8 | 1 | CTG | TAA | TransCirc | No |
chr2|241373083|241418109|+|7|circRNA|FARP2|ENST00000264042.7|2,3,4,5,6,7,8 | circFARP2(2,3,4,5,6,7,8) | FARP2 | LLSRISRCSKLLESWKCTASDFTWLLTGKEPRFNWQFPTWVYSCSSVFFTHGEEWGR | CTASDFTWLLTGKEPR | Yes | Alternative | Junction | 16 | 3 | CTG | TAG | NA | No |
chr2|241403827|241413421|+|5|circRNA|FARP2|ENST00000264042.7|3,4,5,6,7 | circFARP2(3,4,5,6,7) | FARP2 | LDREHLKVNEYLPGQQHCLEKILEFHQKHVLNAMARYY | ILEFHQKHVLNAMAR | No | Junction | Junction | 15 | 3 | CTG | TGA | TransCirc | No |
chr2|241403827|241418109|+|6|circRNA|FARP2|ENST00000264042.7|3,4,5,6,7,8 | circFARP2(3,4,5,6,7,8) | FARP2 | LLSRISRCSKLLESWKCTASDFTWLLTGKEPRFNWQFPTWVYSCSSLNAMARYY | FNWQFPTWVYSCSSLNAMARYY | No | Junction | Junction | 22 | 3 | CTG | TGA | TransCirc | No |
chr2|241403827|241434321|+|8|circRNA|FARP2|ENST00000264042.7|3,4,5,6,7,8,9,10 | circFARP2(3,4,5,6,7,8,9,10) | FARP2 | MNVRTSGRFVWSITPFLDFWTNLSQKQKPSSSAGAPPSDTA | QKPSSSAGAPPSDTA | No | Junction | Junction | 15 | 2 | ATG | TAA | TransCirc | No |
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