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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|234995302|235043247|+|3|circRNA|SH3BP4|ENST00000392011.6|2,3,4 | circSH3BP4(2,3,4) | SH3BP4 | LGMTVPQRRSWSARSHARHPTLPRWPCSCGGSTSSFCPGPRISRSVCFPI | LGMTVPQRR | No | Alternative | Alternative | 9 | 1 | TTG | TGA | TransCirc | No |
chr2|23639138|23642850|+|2|circRNA|KLHL29|ENST00000486442.5|4,5 | circKLHL29(4,5) | KLHL29 | MGDHGGRREPAHPDCTLLWSGPASHLQPGCERPGPGHWGDPLTASPRGAPAPADARPLLAPSAALSATEQRGGQHACPGPVCQPSAPGRVHTARCGAGGPPRTHRCGQRPHGRAPAASTAASPAVRHSPQWCPCHQWAPHNRLGPRAADAADHWRGEV | APAASTAASPAVR | No | Alternative | Alternative | 13 | 2 | ATG | TGA | TransCirc | No |
chr2|237510573|237525805|+|5|circRNA|MLPH|ENST00000264605.7|3,4,5,6,7 | circMLPH(3,4,5,6,7) | MLPH | LEEADTGASGCHSHPEEQPTSISPSRHGALAELCPPGGSHRMALGTAAALGR | MALGTAAALGR | No | Alternative | Alternative | 11 | 1 | CTG | TGA | TransCirc | No |
chr2|238275742|238277955|-|3|circRNA|PER2|NM_022817|4,3,2 | circPER2(4,3,2) | PER2 | LIKTLKELKVHLPADKKAKGKASTLATLKYALRSVKQVKASFQSPA | ASFQSPA | No | Alternative | Junction | 7 | 2 | CTG | TGA | TransCirc | No |
chr2|238444341|238444727|+|1|circRNA|ASB1|ENST00000264607.8|4 | circASB1(4) | ASB1 | LTPDVQPRFSRRLTSLVVCPLYISAAYHNLQCFRLLLLAGANPDFNCNGPVNTQGFYRGSPGCVMDAVLRHGCEAAFVSLLVEFGANLNLVKWESLGPESRGRRKVDPEALQVFKEARSTGLMLTSTTT | EARSTGLMLTSTTT | No | Junction | Junction | 14 | 2 | CTG | TGA | TransCirc | No |
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