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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|230255451|230287966|+|7|circRNA|SP140|NM_001278452|10,11,12,13,14,15,16 | circSP140(10,11,12,13,14,15,16) | SP140 | LEPASLRVTELHRKESDQERAVMTVRKCVMEKSARKPLAP | LEPASLR | No | Alternative | Junction | 7 | 1 | CTG | TAG | NA | No |
chr2|231214830|231216793|+|2|circRNA|ARMC9|ENST00000349938.8|4,5 | circARMC9(4,5) | ARMC9 | MPFLLFPTLWCTPHLKNSSRRILSLHLTTETRRCSSICGRSTFQVPSEMGTPLPRSWNSISTSILPSIF | ILSLHLTTETRR | No | Alternative | Junction | 12 | 2 | ATG | TGA | TransCirc | No |
chr2|231214830|231216793|+|2|circRNA|ARMC9|ENST00000349938.8|4,5 | circARMC9(4,5) | ARMC9 | MPFLLFPTLWCTPHLKNSSRRILSLHLTTETRRCSSICGRSTFQVPSEMGTPLPRSWNSISTSILPSIF | RCSSICGR | No | Alternative | Junction | 8 | 2 | ATG | TGA | TransCirc | No |
chr2|231214830|231216793|+|2|circRNA|ARMC9|ENST00000349938.8|4,5 | circARMC9(4,5) | ARMC9 | MPFLLFPTLWCTPHLKNSSRRILSLHLTTETRRCSSICGRSTFQVPSEMGTPLPRSWNSISTSILPSIF | STFQVPSEMGTPLPR | No | Alternative | Junction | 15 | 2 | ATG | TGA | TransCirc | No |
chr2|232136471|232198776|+|3|circRNA|DIS3L2|ENST00000433430.5|8,9,10 | circDIS3L2(8,9,10) | DIS3L2 | LAWWDSAALIAPLGMESCILNTSKPSYKSSWTGNKRVRDQAISALHTNSLG | SSWTGNK | No | Alternative | Alternative | 7 | 1 | CTG | TGA | NA | No |
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