top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|222900673|222934687|+|14|circRNA|ACSL3|ENST00000357430.7|3,4,5,6,7,8,9,10,11,12,13,14,15,16 | circACSL3(3,4,5,6,7,8,9,10,11,12,13,14,15,16) | ACSL3 | MRYLKCFPKLLFQIQNSLLGRTGETAVTFATLRSCWSCVTPP | LLFQIQNSLLGR | No | Junction | Junction | 12 | 3 | ATG | TAG | TransCirc | No |
chr2|223765212|223777869|-|3|circRNA|AP1S3|ENST00000443700.5|4,3,2 | circAP1S3(4,3,2) | AP1S3 | LLSKPLKTLICYRRYISYCSSVDKGNYGYRNGTSLSLIKRGRRSPGKLFRLFSPVVTGQAVLLTGRS | SPGKLFR | No | Alternative | Junction | 7 | 2 | TTG | TAA | TransCirc | No |
chr2|223984751|224001922|-|4|circRNA|SERPINE2|NR_073116|6,5,4,3 | circSERPINE2(6,5,4,3) | SERPINE2 | LDEHHGAQEGAGDPAQVVLGGRNHELASPPLPLGLCDAAFHLLPLQSSVSRGTRLQHGDPGFQSDCEVEAS | GTRLQHGDPGFQSDCEVEAS | No | Alternative | Junction | 20 | 2 | CTG | TGA | TransCirc | No |
chr2|223984751|224001922|-|4|circRNA|SERPINE2|NR_073116|6,5,4,3 | circSERPINE2(6,5,4,3) | SERPINE2 | LDEHHGAQEGAGDPAQVVLGGRNHELASPPLPLGLCDAAFHLLPLQSSVSRGTRLQHGDPGFQSDCEVEAS | LDEHHGAQEGAGDPAQVVLGGR | No | Junction | Junction | 22 | 2 | CTG | TGA | TransCirc | No |
chr2|223984751|224001922|-|4|circRNA|SERPINE2|NR_073116|6,5,4,3 | circSERPINE2(6,5,4,3) | SERPINE2 | LDEHHGAQEGAGDPAQVVLGGRNHELASPPLPLGLCDAAFHLLPLQSSVSRGTRLQHGDPGFQSDCEVEAS | NHELASPPLPLGLCDAAFHLLPLQSSVSRGTR | No | Alternative | Junction | 32 | 2 | CTG | TGA | TransCirc | No |
Page 1 of 1
bottom of page