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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|178535731|178584993|+|9|circRNA|TTN-AS1|ENST00000419746.5|3,4,5,6,7,8,9,10,11 | circTTN-AS1(3,4,5,6,7,8,9,10,11) | TTN-AS1 | LRGAGGIYMNQEERNVITGSGLPLKGILMLTTSPRRA | GAGGIYMNQEER | No | Alternative | Junction | 12 | 2 | CTG | TGA | TransCirc | No |
chr2|179444875|179446770|-|3|circRNA|ZNF385B|ENST00000466398.5|11,10,9 | circZNF385B(11,10,9) | ZNF385B | LKVAHFSSNLAQHPCHLEQPLLPPRAQMELPVLLLNQKKKKPKNYFIVHYAKWL | LKVAHFSSNLAQHPCHLEQPLLPPR | No | Alternative | Alternative | 25 | 2 | CTG | TGA | TransCirc | No |
chr2|181525291|181527293|+|1|ciRNA|ITGA4|NM_000885|21 | ciITGA4(21) | ITGA4 | LAARCPLSTFYTYGITRFLNHSIRIHCFLMILMIEWIPLSFKKEMCGERIKGGLRKPSVIPLELIHGVSP | LAARCPLSTFYTYGITR | No | Alternative | Alternative | 17 | 1 | CTG | TAA | NA | No |
chr2|181909898|181922412|+|8|circRNA|SSFA2|NM_001130445|9,10,11,12,13,14,15,16 | circSSFA2(9,10,11,12,13,14,15,16) | SSFA2 | LKWKKGMENSHQCQLLRKCIKMWSKMSCSKSYGRFKVRREKLLMFQPLTS | KGMENSHQCQLLR | No | Alternative | Junction | 13 | 2 | CTG | TAG | TransCirc | No |
chr2|189666040|189667596|+|1|circRNA|ASNSD1|NM_019048|4 | circASNSD1(4) | ASNSD1 | LVSGPGRSEILSEQCKDILDELKKEYQEIENLDKTKIKK | LVSGPGR | No | Alternative | Junction | 7 | 2 | TTG | TAG | TransCirc | No |
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