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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|47396799|47529147|-|15|circRNA|TNS3|ENST00000311160.13|16,15,14,13,12,11,10,9,8,7,6,5,4,3,2 | circTNS3(16,15,14,13,12,11,10,9,8,7,6,5,4,3,2) | TNS3 | LYNDHGVIVDYNTTDPLIRWDSYENLSADGEAGRINLESARF | INLESARF | No | Alternative | Junction | 8 | 3 | TTG | TAA | TransCirc | No |
chr7|4783798|4784183|+|1|ciRNA|AP5Z1|ENST00000348624.4|5 | ciAP5Z1(5) | AP5Z1 | MGNRVTDNPSLRAPVPTAARPAVVPRGPGRACLCCGAWVRQGHSPLTRVALGVCARVQSQGLRSRVCDARLPGGQVGMVFLHHTGRAAARAHVQAASPPPPEELVLKAGVFPGLGPLRPLVRLGLFWNHGEQSHRQPLPESSCAHSGEACCRSAGSRTSLPLLRGLGQAGPQPPDPCGSGGLCAGSVPGPAEQGVRRASAWGSGGDGVFASHRAGRCPGSCSGSFSSTS | AGVFPGLGPLRPLVR | No | Junction | Junction | 15 | 2 | ATG | TGA | NA | No |
chr7|4783798|4784183|+|1|ciRNA|AP5Z1|ENST00000348624.4|5 | ciAP5Z1(5) | AP5Z1 | MGNRVTDNPSLRAPVPTAARPAVVPRGPGRACLCCGAWVRQGHSPLTRVALGVCARVQSQGLRSRVCDARLPGGQVGMVFLHHTGRAAARAHVQAASPPPPEELVLKAGVFPGLGPLRPLVRLGLFWNHGEQSHRQPLPESSCAHSGEACCRSAGSRTSLPLLRGLGQAGPQPPDPCGSGGLCAGSVPGPAEQGVRRASAWGSGGDGVFASHRAGRCPGSCSGSFSSTS | VTDNPSLR | No | Alternative | Junction | 8 | 2 | ATG | TGA | NA | No |
chr7|50463212|50504059|-|8|circRNA|DDC|ENST00000357936.9|14,13,12,11,10,9,8,7 | circDDC(14,13,12,11,10,9,8,7) | DDC | MSPQGQVCPALCHLFSHGGICPCAAGLGTHQRAGGRRAASREGVGVKPAADGCHPGDHNMLLL | AASREGVGVKPAADGCHPGDHNMLLL | No | Junction | Junction | 26 | 3 | ATG | TGA | TransCirc | No |
chr7|50669721|50703908|-|3|circRNA|GRB10|ENST00000398810.6|4,3,2 | circGRB10(4,3,2) | GRB10 | LWPWEPPCAHAGFFTSEPGRRKAGQGGADTSQSTRPGRTRTPRTV | AGQGGADTSQSTRPGR | Yes | Junction | Junction | 16 | 1 | CTG | TGA | NA | No |
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