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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|130930951|130931257|+|1|circRNA|ARHGEF4|ENST00000409359.5|3 | circARHGEF4(3) | ARHGEF4 | MESRTTCPGKNQQVRSPVALTVRRRSTWSLPRSPASPLTW | SPVALTVRR | No | Alternative | Junction | 9 | 2 | ATG | TGA | TransCirc | No |
chr2|134919012|134919808|+|1|ciRNA|CCNT2|ENST00000419781.5|1 | ciCCNT2(1) | CCNT2 | LFAAAHALFPLPGRRAWCPANMAPPASAFAGPRRRGQGSNVPARAVARGQQRKGGGDRTPGMRARSLRCVICLGQRVVVAAGVGSVAQAKEEF | AWCPANMAPPASAFAGPR | No | Alternative | Alternative | 18 | 2 | CTG | TAG | NA | No |
chr2|134919012|134919808|+|1|ciRNA|CCNT2|ENST00000419781.5|1 | ciCCNT2(1) | CCNT2 | LFAAAHALFPLPGRRAWCPANMAPPASAFAGPRRRGQGSNVPARAVARGQQRKGGGDRTPGMRARSLRCVICLGQRVVVAAGVGSVAQAKEEF | GQGSNVPAR | No | Alternative | Alternative | 9 | 2 | CTG | TAG | NA | No |
chr2|134919012|134919808|+|1|ciRNA|CCNT2|ENST00000419781.5|1 | ciCCNT2(1) | CCNT2 | LFAAAHALFPLPGRRAWCPANMAPPASAFAGPRRRGQGSNVPARAVARGQQRKGGGDRTPGMRARSLRCVICLGQRVVVAAGVGSVAQAKEEF | RGQGSNVPAR | No | Alternative | Alternative | 10 | 2 | CTG | TAG | NA | No |
chr2|134919012|134919808|+|1|ciRNA|CCNT2|ENST00000419781.5|1 | ciCCNT2(1) | CCNT2 | LGLGAAVREVMFRLGQSRGVSRGREEEIGPQECGPGACVV | LGLGAAVR | No | Alternative | Alternative | 8 | 1 | CTG | TAA | NA | No |
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