top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|7140647|7189322|+|6|circRNA|RREB1|ENST00000483150.1|2,3,4,5,6,7 | circRREB1(2,3,4,5,6,7) | RREB1 | LSSASSLDRHMLVHSGERPYKCTVCGQSFTTNGNMHRFEAAGPRLLLLSWTAGSGSAP | CTVCGQSFTTNGNMHRFEAAGPR | No | Junction | Junction | 23 | 1 | CTG | TGA | riboCIRC,TransCirc | No |
chr6|7140647|7189322|+|6|circRNA|RREB1|ENST00000483150.1|2,3,4,5,6,7 | circRREB1(2,3,4,5,6,7) | RREB1 | LSSASSLDRHMLVHSGERPYKCTVCGQSFTTNGNMHRFEAAGPRLLLLSWTAGSGSAP | FEAAGPR | No | Alternative | Junction | 7 | 1 | CTG | TGA | riboCIRC,TransCirc | No |
chr6|7140647|7189322|+|6|circRNA|RREB1|ENST00000483150.1|2,3,4,5,6,7 | circRREB1(2,3,4,5,6,7) | RREB1 | LSSASSLDRHMLVHSGERPYKCTVCGQSFTTNGNMHRFEAAGPRLLLLSWTAGSGSAP | FEAAGPRLLLLSWTAGSGSAP | No | Alternative | Junction | 21 | 1 | CTG | TGA | riboCIRC,TransCirc | No |
chr6|7176654|7182082|+|3|circRNA|RREB1|ENST00000379933.7|2,3,4 | circRREB1(2,3,4) | RREB1 | MAGAPRGSSPPRSLQDQIGLAEGTRLLRLCVPGVVALRCDPAHVWAQPGSAPQ | LCVPGVVALR | Yes | Alternative | Junction | 10 | 2 | ATG | TAA | riboCIRC,TransCirc | No |
chr6|7176654|7182082|+|3|circRNA|RREB1|ENST00000379933.7|2,3,4 | circRREB1(2,3,4) | RREB1 | MAGAPRGSSPPRSLQDQIGLAEGTRLLRLCVPGVVALRCDPAHVWAQPGSAPQ | MAGAPRGSSPPR | Yes | Alternative | Junction | 12 | 2 | ATG | TAA | riboCIRC,TransCirc | No |
Page 1 of 1
bottom of page