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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|36902220|36902434|+|1|circRNA|C6orf89|ENST00000359359.6|5 | circC6orf89(5) | C6orf89 | LGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENKGVPLHGGDEDRPFPGSRNLGINLAHCLLCDSTFQPIST | GVPLHGGDEDRPFPGSR | No | Junction | Junction | 17 | 1 | TTG | TGA | TransCirc | No |
chr6|36902220|36902434|+|1|circRNA|C6orf89|ENST00000359359.6|5 | circC6orf89(5) | C6orf89 | LGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENKGVPLHGGDEDRPFPGSRNLGINLAHCLLCDSTFQPIST | YMSENKGVPLHGGDEDRPFPGSR | No | Junction | Junction | 23 | 1 | TTG | TGA | TransCirc | No |
chr6|37450250|37453312|+|4|circRNA|CMTR1|NM_015050|5,6,7,8 | circCMTR1(5,6,7,8) | CMTR1 | LYLIACSQIRGTLMGPVLVSRCHGFQNVPLKFLTLRK | GTLMGPVLVSR | No | Junction | Junction | 11 | 3 | TTG | TGA | TransCirc | No |
chr6|38061592|38116739|+|3|circRNA|ZFAND3|ENST00000287218.8|3,4,5 | circZFAND3(3,4,5) | ZFAND3 | LRIRNGPRKPVDLNRRVDVGASSAKPNWSWCSRNWDRVAAIFKRNSQTMIPLQVQVTANQICFPKRPPVTTTIPR | KPVDLNRR | No | Alternative | Junction | 8 | 1 | TTG | TAA | TransCirc | No |
chr6|397252|398826|+|1|ciRNA|IRF4|NM_001195286|5 | ciIRF4(5) | IRF4 | LFLCNLAFFSPVMFRLSLAAGSEEVYHSLMFVLSGMFTKKLRIQLHWLFKRDLQQGLVSNMVVEELANIKLAPEIQTCVYCSGSMELVTMGKRQCLELCKVME | DLQQGLVSNMVVEELANIK | No | Alternative | Alternative | 19 | 2 | TTG | TAG | NA | No |
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