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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|3283851|3287091|-|4|circRNA|SLC22A23|ENST00000436008.6|10,9,8,7 | circSLC22A23(10,9,8,7) | SLC22A23 | LCGDHPDGDKADGVRDPPLLCQEHDGPRGEGAAPGELLC | GEGAAPGELLC | No | Alternative | Junction | 11 | 2 | CTG | TGA | TransCirc | No |
chr6|34091882|34133859|-|2|circRNA|GRM4|NM_000841|3,2 | circGRM4(3,2) | GRM4 | LMPRYAKLGAFCPFHSHPPRTGLQDGTRIRAFLQPRPLPAVCGPGLCGQLCLARVTRRWERVAAWATRLAALSPPAAEAALPMPTQAVGPGACQG | LGAFCPFHSHPPR | No | Alternative | Alternative | 13 | 1 | TTG | TAG | NA | No |
chr6|34091882|34133859|-|2|circRNA|GRM4|NM_000841|3,2 | circGRM4(3,2) | GRM4 | MGTSHWEACSRCMAGAQRASPVENLRRKRASTGWRPCCSPWIASTTTRTCCLTSRWAPAFWTPAPGTPMPSSSR | CMAGAQR | No | Alternative | Alternative | 7 | 3 | ATG | TGA | NA | No |
chr6|34091882|34133859|-|2|circRNA|GRM4|NM_000841|3,2 | circGRM4(3,2) | GRM4 | MGTSHWEACSRCMAGAQRASPVENLRRKRASTGWRPCCSPWIASTTTRTCCLTSRWAPAFWTPAPGTPMPSSSR | CMAGAQRASPVENLR | No | Alternative | Alternative | 15 | 3 | ATG | TGA | NA | No |
chr6|345928|348102|+|1|ciRNA|DUSP22|ENST00000603296.5|5 | ciDUSP22(5) | DUSP22 | LCVSRPFLLLKENPNSFCFCFFPISTARISVGTVKVTGQQKLPFAGLPPAFHQNSLLQMTQIL | ISVGTVK | No | Alternative | Alternative | 7 | 1 | CTG | TAG | NA | No |
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