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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|138429710|138433680|-|2|circRNA|NHSL1|ENST00000427025.6|6,5 | circNHSL1(6,5) | NHSL1 | LFNQQWGAHWERASPPCPRRVQSHNAPSARWFSQTKDHVTREVTQSHFSIQWVFQPVEYTHSTHPCACVFKISVTSKREGEAQAQGTRKEVLSDIFSIHFLIVHFSFF | EGEAQAQGTR | No | Alternative | Alternative | 10 | 3 | CTG | TAG | NA | No |
chr6|138441982|138496371|-|3|rescued|NHSL1|ENST00000343505|107,87,153|0,31364,54236 | circNHSL1(NE,NE,5L) | NHSL1 | MRKADGQSTTLPRGTSRRMCSFPPQDPPVLRTCTAKPSSTSNQY | KADGQSTTLPR | Yes | Alternative | Alternative | 11 | 3 | ATG | TGA | TransCirc | No |
chr6|143765260|143765798|+|1|circRNA|PHACTR2|ENST00000367584.8|5 | circPHACTR2(5) | PHACTR2 | MLAPLIQKKQLALKHQLRHPLHPPHLVPKLQRRQFLAKQGQWGPPRAREKLTSSQ | MLAPLIQKK | No | Junction | Junction | 9 | 2 | ATG | TAA | TransCirc | No |
chr6|145934906|145935441|-|2|circRNA|SHPRH|ENST00000367505.6|13,12 | circSHPRH(13,12) | SHPRH | LGSEAQQPRQKDCHLYPVSIAEAQTGLLSPTGCSWRVLATPKKIFLG | LGSEAQQPR | No | Alternative | Junction | 9 | 3 | CTG | TAG | TransCirc | No |
chr6|148471416|148487715|+|3|circRNA|SASH1|NM_015278|6,7,8 | circSASH1(6,7,8) | SASH1 | LDPADWPDGSYPTFDGSSNCNEKETGRRKISISGRTSERTRKE | ISISGRTSER | No | Alternative | Junction | 10 | 1 | CTG | TAA | TransCirc | No |
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