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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|136147350|136155758|+|5|circRNA|PDE7B|NM_018945|4,5,6,7,8 | circPDE7B(4,5,6,7,8) | PDE7B | LQTYIRYNILRGDWHQEKGEKTIKLSKILPCIKAASWNYTTSPSAPAG | GDWHQEK | No | Alternative | Junction | 7 | 2 | TTG | TGA | TransCirc | No |
chr6|136269436|136275989|-|5|circRNA|BCLAF1|NM_001077441|9,8,7,6,5 | circBCLAF1(9,8,7,6,5) | BCLAF1 | LLTFGMTLIAVEKKEVKNGEIPRAPGNPVDQESRKKLQKITRNTNLTKMTVPLYTRIWMHEKSLPSERKAHLGSK | APGNPVDQESR | No | Alternative | Junction | 11 | 2 | CTG | TGA | TransCirc | No |
chr6|136277864|136282687|-|3|circRNA|BCLAF1|ENST00000353331.8|4,3,2 | circBCLAF1(4,3,2) | BCLAF1 | LNMTHLSLSMNLISHQPHPVIFGLAFQLMIIVLDHPIVLHLLLHHLVRVHLALMLPCSVQFTLQKILLLSIHIPFSIVLKGLGLVLLEMDLVDTVLLRIVQFITSLHEEVLQRQSHHRMLQEMSLGAVPRFILMVEIRKLQRLGSS | GLGLVLLEMDLVDTVLLR | No | Alternative | Alternative | 18 | 3 | TTG | TAA | NA | No |
chr6|13632369|13657276|-|9|circRNA|RANBP9|ENST00000011619.5|12,11,10,9,8,7,6,5,4 | circRANBP9(12,11,10,9,8,7,6,5,4) | RANBP9 | LRRQLCGGSQAAIERMIHFGRELQAMSEQLRRDCGKNTANKKMLKVGISIHMVTMGMMDIRFVLLELDNLMDQLSLLVMSLAVVLILSTIPAFTPRMDIV | FVLLELDNLMDQLSLLVMSLAVVLILSTIPAFTPR | Yes | Alternative | Junction | 35 | 3 | TTG | TAG | riboCIRC,TransCirc | No |
chr6|13632369|13657276|-|9|circRNA|RANBP9|ENST00000011619.5|12,11,10,9,8,7,6,5,4 | circRANBP9(12,11,10,9,8,7,6,5,4) | RANBP9 | LRRQLCGGSQAAIERMIHFGRELQAMSEQLRRDCGKNTANKKMLKVGISIHMVTMGMMDIRFVLLELDNLMDQLSLLVMSLAVVLILSTIPAFTPRMDIV | MLKVGISIHMVTMGMMDIR | Yes | Junction | Junction | 19 | 3 | TTG | TAG | riboCIRC,TransCirc | No |
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