top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|117566853|117569736|-|2|circRNA|RP1-179P9.3|ENST00000467125.1|4,3 | circRP1-179P9.3(4,3) | RP1-179P9.3 | LQRHKWGNQSITRVGKNMVFQSSSLRSIRGNLLIDAEGCTLGMLFWQSTELT | HKWGNQSITR | No | Alternative | Junction | 10 | 3 | TTG | TAA | NA | No |
chr6|117566853|117569736|-|2|circRNA|RP1-179P9.3|ENST00000467125.1|4,3 | circRP1-179P9.3(4,3) | RP1-179P9.3 | LYLDELEGGGNPGASCKDTSGEIKVLQGWERTWCSNPHL | DTSGEIKVLQGWER | No | Junction | Junction | 14 | 1 | TTG | TGA | TransCirc | No |
chr6|117693041|117694180|+|2|circRNA|NUS1|NM_138459|2,3 | circNUS1(2,3) | NUS1 | LPFGSEGAVSGRWKSRYCKSCSGLLPVSSPEAKETHRFGCRYVSQFT | ETHRFGCR | No | Alternative | Alternative | 8 | 2 | TTG | TAG | TransCirc | No |
chr6|119002898|119024813|-|9|circRNA|FAM184A|ENST00000621231.4|10,9,8,7,6,5,4,3,2 | circFAM184A(10,9,8,7,6,5,4,3,2) | FAM184A | MMSMNLQFKPSKMLMKKKFNKFLLKQEKKYCSIKAK | MMSMNLQFKPSK | No | Alternative | Alternative | 12 | 3 | ATG | TAA | TransCirc | No |
chr6|119193776|119204882|-|3|circRNA|MAN1A1|NM_005907|9,8,7 | circMAN1A1(9,8,7) | MAN1A1 | LLKAWLMSDKTDLEAKKMYFDAVQWYWKELALGLWRQQYSGRIWNPAFGVYALEPLIRKPHLC | ELALGLWRQQYSGR | No | Alternative | Junction | 14 | 3 | TTG | TGA | TransCirc | No |
Page 1 of 1
bottom of page