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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|11189963|11191205|-|1|circRNA|NEDD9|ENST00000379446.9|5 | circNEDD9(5) | NEDD9 | LQNRWLEGTRACPRITHPRNSDSQWALRTTHMMSPEAFSFLSHQQKPVRKQTPRKGMVFMMSLCITRQMLKALGTWWMGSTDCLSPVQAAPGVTCPRLPPPPRSPHCQPPQLRTKGSSWIQTQLLRDFSGSSRPLRWVSPA | KGMVFMMSLCITR | No | Alternative | Alternative | 13 | 2 | CTG | TAA | TransCirc | No |
chr6|11189963|11191205|-|1|circRNA|NEDD9|ENST00000379446.9|5 | circNEDD9(5) | NEDD9 | LTVAAVMVLRGAGWMTTITSTYRYMPFRPLLAGMKQGLGKKTMTSPLP | GAGWMTTITSTYR | No | Alternative | Junction | 13 | 2 | CTG | TGA | TransCirc | No |
chr6|115956451|116003998|-|4|circRNA|FRK|ENST00000606080.1|5,4,3,2 | circFRK(5,4,3,2) | FRK | MEVCKNISKVVLWSNRKIRCRETTIIFRKQDRFLSNQRK | CRETTIIFR | No | Alternative | Junction | 9 | 1 | ATG | TGA | TransCirc | No |
chr6|115956451|116003998|-|4|circRNA|FRK|ENST00000606080.1|5,4,3,2 | circFRK(5,4,3,2) | FRK | MEVCKNISKVVLWSNRKIRCRETTIIFRKQDRFLSNQRK | QDRFLSNQR | No | Alternative | Junction | 9 | 1 | ATG | TGA | TransCirc | No |
chr6|115956451|116003998|-|4|circRNA|FRK|ENST00000606080.1|5,4,3,2 | circFRK(5,4,3,2) | FRK | MEVCKNISKVVLWSNRKIRCRETTIIFRKQDRFLSNQRK | VVLWSNR | No | Alternative | Junction | 7 | 1 | ATG | TGA | TransCirc | No |
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