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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|10935057|10956242|+|5|circRNA|SYCP2L|ENST00000341041.8|21,22,23,24,25 | circSYCP2L(21,22,23,24,25) | SYCP2L | LPFSQPLKTSLKNGKENMRLSFYHHQRKKYPSKITPHLQRLLNKNSKIVLLF | ENMRLSFYHHQR | No | Junction | Junction | 12 | 1 | CTG | TGA | TransCirc | No |
chr6|10935057|10956242|+|5|circRNA|SYCP2L|ENST00000341041.8|21,22,23,24,25 | circSYCP2L(21,22,23,24,25) | SYCP2L | LPFSQPLKTSLKNGKENMRLSFYHHQRKKYPSKITPHLQRLLNKNSKIVLLF | ITPHLQR | No | Alternative | Junction | 7 | 1 | CTG | TGA | TransCirc | No |
chr6|10935057|10956242|+|5|circRNA|SYCP2L|ENST00000341041.8|21,22,23,24,25 | circSYCP2L(21,22,23,24,25) | SYCP2L | LPFSQPLKTSLKNGKENMRLSFYHHQRKKYPSKITPHLQRLLNKNSKIVLLF | LSFYHHQR | No | Alternative | Junction | 8 | 1 | CTG | TGA | TransCirc | No |
chr6|10935057|10956242|+|5|circRNA|SYCP2L|ENST00000341041.8|21,22,23,24,25 | circSYCP2L(21,22,23,24,25) | SYCP2L | LPFSQPLKTSLKNGKENMRLSFYHHQRKKYPSKITPHLQRLLNKNSKIVLLF | YPSKITPHLQR | No | Alternative | Junction | 11 | 1 | CTG | TGA | TransCirc | No |
chr6|109451599|109452615|-|2|circRNA|MICAL1|ENST00000456101.6|7,6 | circMICAL1(7,6) | MICAL1 | LITQHEKSWNLSEMNLCMGVLLKWYFKKVPLFTLVLHCHATRWCRSPKCHPPPSFPLCSKSSGLLGLGQMVVCVIRTRGVLCVEHSPQPKLGSQLRGQAMLGCLGKVMHYQETYLLSPALYPQALIWRTLCTTRTTPTTL | CHPPPSFPLCSKSSGLLGLGQMVVCVIR | No | Alternative | Alternative | 28 | 3 | TTG | TGA | NA | No |
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