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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|98892524|98894686|-|3|circRNA|CHD1|ENST00000614616.4|15,14,13 | circCHD1(15,14,13) | CHD1 | LKKNMAKGENMVMQAFTRSLSHFCYAELRKMWKNLFLPRLSRF | NMAKGENMVMQAFTR | No | Alternative | Alternative | 15 | 3 | TTG | TAA | NA | No |
chr5|98896225|98899705|-|5|circRNA|CHD1|ENST00000614616.4|12,11,10,9,8 | circCHD1(12,11,10,9,8) | CHD1 | MGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMLLVLLQPSMQLKQMVTQMQALKKTKNQERFSI | NMLLVLLQPSMQLK | No | Junction | Junction | 14 | 2 | ATG | TAA | riboCIRC,TransCirc | No |
chr6|100589633|100638821|-|12|circRNA|ASCC3|ENST00000369162.6|36,35,34,33,32,31,30,29,28,27,26,25 | circASCC3(36,35,34,33,32,31,30,29,28,27,26,25) | ASCC3 | LKHQTVKMFKDRLKPECSTEELLSILSNYWIFSLYQSQLWDVKHMKPCTTSATLTLYRHKYFIHCITRIVMSYLEHLLDRERLLQLN | IVMSYLEHLLDRER | No | Alternative | Junction | 14 | 1 | TTG | TAG | TransCirc | No |
chr6|106279660|106316266|-|4|circRNA|ATG5|ENST00000343245.7|5,4,3,2 | circATG5(5,4,3,2) | ATG5 | LHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNVWLWLK | DHKQLWMGLQNVWLWLK | No | Junction | Junction | 17 | 1 | CTG | TAA | TransCirc | No |
chr6|106511429|106513039|+|1|circRNA|AIM1|ENST00000633556.1|3 | circAIM1(3) | AIM1 | LICQVSLRPRAQRTRPAPRRQTAQPAPRVTPTLLRC | LICQVSLRPR | No | Alternative | Alternative | 10 | 1 | CTG | TAA | NA | No |
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