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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|94888878|94912976|-|4|circRNA|MCTP1|ENST00000515393.5|12,11,10,9 | circMCTP1(12,11,10,9) | MCTP1 | LRIFHNLKDVGFLQVKVIRAEGLMAADVTVSDPKFTPIRPTQKIASLERNSQHHLD | VIRAEGLMAADVTVSDPK | No | Junction | Junction | 18 | 1 | TTG | TGA | TransCirc | No |
chr5|94909250|94912976|-|2|circRNA|MCTP1|ENST00000515393.5|10,9 | circMCTP1(10,9) | MCTP1 | MPKTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDFIGSFRPKVYAYQTYTENRIFGEE | DDFIGSFRPK | No | Junction | Junction | 10 | 1 | ATG | TAG | TransCirc | No |
chr5|94909250|94912976|-|2|circRNA|MCTP1|ENST00000515393.5|10,9 | circMCTP1(10,9) | MCTP1 | MPKTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDFIGSFRPKVYAYQTYTENRIFGEE | DDFIGSFRPKVYAYQTYTENR | No | Junction | Junction | 21 | 1 | ATG | TAG | TransCirc | No |
chr5|94909250|94912976|-|2|circRNA|MCTP1|ENST00000515393.5|10,9 | circMCTP1(10,9) | MCTP1 | MPKTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDFIGSFRPKVYAYQTYTENRIFGEE | RDDFIGSFRPK | No | Junction | Junction | 11 | 1 | ATG | TAG | TransCirc | No |
chr5|95748332|95755761|+|3|circRNA|RHOBTB3|NM_014899|4,5,6 | circRHOBTB3(4,5,6) | RHOBTB3 | LHFQVLAMNLQATHHYESLLKTPSSVLVYQTSFASFIQKSYLVHAHYVPQTEGAVLVQLKGSNLQKN | LHFQVLAMNLQATHHYESLLK | No | Alternative | Junction | 21 | 1 | CTG | TAG | TransCirc | No |
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