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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|73832337|73840760|+|2|circRNA|ARHGEF28|ENST00000296794.10|10,11 | circARHGEF28(10,11) | ARHGEF28 | LDISYINIEGITATTSPESRGCTLWPQSSKHTLPTETSPSVYPLSENVEGTAHTEAQQSFMSPSSSCASNLNLSFGWHGFEKEQSHLKKRRSLLRYPKKIQAALDIACCRPAFRHAEWR | IQAALDIACCRPAFR | No | Alternative | Junction | 15 | 1 | TTG | TGA | TransCirc | No |
chr5|73832337|73840760|+|2|circRNA|ARHGEF28|ENST00000296794.10|10,11 | circARHGEF28(10,11) | ARHGEF28 | LDISYINIEGITATTSPESRGCTLWPQSSKHTLPTETSPSVYPLSENVEGTAHTEAQQSFMSPSSSCASNLNLSFGWHGFEKEQSHLKKRRSLLRYPKKIQAALDIACCRPAFRHAEWR | IQAALDIACCRPAFRHAEWR | No | Alternative | Junction | 20 | 1 | TTG | TGA | TransCirc | No |
chr5|73832337|73840760|+|2|circRNA|ARHGEF28|ENST00000296794.10|10,11 | circARHGEF28(10,11) | ARHGEF28 | LDISYINIEGITATTSPESRGCTLWPQSSKHTLPTETSPSVYPLSENVEGTAHTEAQQSFMSPSSSCASNLNLSFGWHGFEKEQSHLKKRRSLLRYPKKIQAALDIACCRPAFRHAEWR | KIQAALDIACCRPAFR | No | Alternative | Junction | 16 | 1 | TTG | TGA | TransCirc | No |
chr5|73840479|73846475|+|2|circRNA|ARHGEF28|ENST00000296794.10|11,12 | circARHGEF28(11,12) | ARHGEF28 | LMPWTPTVKGKGILSHPTSVTLQGLRAPQELGFLVGMNWTLLRLTLNRILISPGLNPFLYQVIYSRRLVIWISAILI | GILSHPTSVTLQGLR | No | Alternative | Junction | 15 | 3 | TTG | TAG | NA | No |
chr5|74634683|74636498|-|1|circRNA|ENC1|ENST00000302351.8|2 | circENC1(2) | ENC1 | LLPPRTVADSKAGTSASHLSHGECGHGGTHHQAEKE | TVADSKAGTSASHLSHGECGHGGTHHQAEK | No | Alternative | Alternative | 30 | 1 | TTG | TAA | NA | No |
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