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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|65576878|65583219|+|3|circRNA|PPWD1|NM_015342|6,7,8 | circPPWD1(6,7,8) | PPWD1 | LIEMFLMRNLLKKKSWQLLKLKDLNEFRTVPLSTPAWETFTPNFFLLNVY | LKDLNEFR | No | Alternative | Junction | 8 | 2 | CTG | TGA | TransCirc | No |
chr5|65579423|65583219|+|2|circRNA|PPWD1|NM_015342|7,8 | circPPWD1(7,8) | PPWD1 | LIEMFLMRNLLKKKSWQLLKLKDLNEFRTVPLSTPAWETFTPNFFLLSVCGF | DLNEFRTVPLSTPAWETFTPNFFLLSVCGF | No | Junction | Junction | 30 | 2 | CTG | TAG | TransCirc | No |
chr5|65604910|65611881|-|4|circRNA|TRIM23|NM_001656|7,6,5,4 | circTRIM23(7,6,5,4) | TRIM23 | MIVELSWQNRKLQGYWKHCRNSSSSLQKLQITFSWMPASLSLLQRASFVVMKMKLTLPLYIALCVQLICALSVLKLLILQRH | ASFVVMK | No | Alternative | Junction | 7 | 2 | ATG | TAG | TransCirc | No |
chr5|6610954|6632756|-|10|circRNA|NSUN2|ENST00000264670.10|11,10,9,8,7,6,5,4,3,2 | circNSUN2(11,10,9,8,7,6,5,4,3,2) | NSUN2 | MTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERWAGKEATPRSSRRTSCSSTTTRSSRSCPRASGASSWTLSGSRSRPL | ASGASSWTLSGSRSRPL | No | Alternative | Junction | 17 | 1 | ATG | TAA | TransCirc | No |
chr5|66153462|66164897|+|6|circRNA|SREK1|ENST00000334121.10|2,3,4,5,6,7 | circSREK1(2,3,4,5,6,7) | SREK1 | LERAMKEKAVDLVPILAQNPGLAQNPILEGKDHNQNTATHLLLFPPKYVMLSFVIHQVLAWPSI | DHNQNTATHLLLFPPK | No | Junction | Junction | 16 | 1 | CTG | TAA | TransCirc | No |
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