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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|56864733|56882866|+|11|circRNA|MAP3K1|NM_005921|4,5,6,7,8,9,10,11,12,13,14 | circMAP3K1(4,5,6,7,8,9,10,11,12,13,14) | MAP3K1 | LKMEKISSLFNRIFRVAESHHPEEPLHQMASHHIALRKQTAVLTK | ISSLFNR | No | Alternative | Junction | 7 | 3 | TTG | TGA | NA | No |
chr5|58975656|59038971|-|9|circRNA|PDE4D|ENST00000340635.10|14,13,12,11,10,9,8,7,6 | circPDE4D(14,13,12,11,10,9,8,7,6) | PDE4D | MLPWKNHRGGLPETGQRDPGGAGLVSGPARDPTDQALRQ | DPGGAGLVSGPAR | No | Alternative | Junction | 13 | 2 | ATG | TGA | TransCirc | No |
chr5|58975656|59038971|-|9|circRNA|PDE4D|ENST00000340635.10|14,13,12,11,10,9,8,7,6 | circPDE4D(14,13,12,11,10,9,8,7,6) | PDE4D | MLPWKNHRGGLPETGQRDPGGAGLVSGPARDPTDQALRQ | GGLPETGQRDPGGAGLVSGPAR | No | Alternative | Junction | 22 | 2 | ATG | TGA | TransCirc | No |
chr5|60887439|60893643|-|3|circRNA|ERCC8|ENST00000462279.5|9,8,7 | circERCC8(9,8,7) | ERCC8 | LAWVPSLYEPVPDDDEIPAGSIGREQADSNLSAFKLIMMMKLRNKNEKPGKVSKGCKKPAKQNGKKATSKVPSAPQFVHSNDHANREAEIKKRVEEMREKQQAAQEQERQKRRSIKSYCEDILRRQEEFQCKEEVLQELNMFPQLDDEATMKAYYKESVRW | SYCEDILRR | No | Alternative | Junction | 9 | 1 | CTG | TAG | NA | No |
chr5|60887439|60893643|-|3|circRNA|ERCC8|ENST00000462279.5|9,8,7 | circERCC8(9,8,7) | ERCC8 | LEVLDARDPLGCCCCFQMGEAILWAEGNKKLVLVLKKIDLDPKEVVKWLDYLRNELPTVAFKARTQHQVSFGAENLMRVLGNYCCLGEMRTHIHMDIVGLPNIGKSSLIKSLKHSHACSVGAIPGVTKFMQEVYLDKFIRLLDAPAIVPGPSSEVGTILHNCIHI | KIDLDPK | No | Alternative | Alternative | 7 | 3 | CTG | TAG | NA | No |
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