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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|43381800|43382052|-|1|circRNA|CCL28|ENST00000489442.5|3 | circCCL28(3) | CCL28 | LPRKMVKEMFATGRNTMARGTVTGHIRGNTKHTAIKLLIRESTDKSTETIPQVDLAMIGSFMSSAEESVSARTTILLSSG | EMFATGRNTMAR | No | Alternative | Junction | 12 | 3 | CTG | TGA | NA | No |
chr5|43453657|43454605|-|2|circRNA|C5orf28|ENST00000512085.5|3,2 | circC5orf28(3,2) | C5orf28 | LFVMASETEKTHALLQTCSTESLISSLGLGAFCLVADRLLQFSTIQQNDWLRALSDNAVHCVIGMWSWAVVTGIKKKTDFGEIILAGFLASVIDVDHFFLAGSMSLKAISCSGAHGLQEEELSLPQDKFWKGI | AISCSGAHGLQEEELSLPQDK | No | Alternative | Junction | 21 | 3 | TTG | TGA | TransCirc | No |
chr5|43453657|43454605|-|2|circRNA|C5orf28|ENST00000512085.5|3,2 | circC5orf28(3,2) | C5orf28 | LFVMASETEKTHALLQTCSTESLISSLGLGAFCLVADRLLQFSTIQQNDWLRALSDNAVHCVIGMWSWAVVTGIKKKTDFGEIILAGFLASVIDVDHFFLAGSMSLKAISCSGAHGLQEEELSLPQDKFWKGI | AISCSGAHGLQEEELSLPQDKFWK | No | Alternative | Junction | 24 | 3 | TTG | TGA | TransCirc | No |
chr5|43609142|43628387|+|6|circRNA|NNT|NM_012343|2,3,4,5,6,7 | circNNT(2,3,4,5,6,7) | NNT | MQGGRHPYQHSTYSSDLPSRKLGSQKIGNSYQHGKPIENSGDWLLVSST | HPYQHSTYSSDLPSR | No | Junction | Junction | 15 | 1 | ATG | TAG | TransCirc | No |
chr5|43609142|43628387|+|6|circRNA|NNT|NM_012343|2,3,4,5,6,7 | circNNT(2,3,4,5,6,7) | NNT | MQGGRHPYQHSTYSSDLPSRKLGSQKIGNSYQHGKPIENSGDWLLVSST | IGNSYQHGKPIENSGDWLLVSST | No | Alternative | Junction | 23 | 1 | ATG | TAG | TransCirc | No |
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