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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|36953617|36986301|+|9|circRNA|NIPBL|NM_015384|2,3,4,5,6,7,8,9,10 | circNIPBL(2,3,4,5,6,7,8,9,10) | NIPBL | LCYKNCLWMMFRNLLKIERTNQEVPLNLSRINHQSQIKCLGNGK | LCYKNCLWMMFR | No | Alternative | Junction | 12 | 1 | TTG | TAA | TransCirc | No |
chr5|36953617|36986301|+|9|circRNA|NIPBL|NM_015384|2,3,4,5,6,7,8,9,10 | circNIPBL(2,3,4,5,6,7,8,9,10) | NIPBL | LCYKNCLWMMFRNLLKIERTNQEVPLNLSRINHQSQIKCLGNGK | NCLWMMFR | No | Alternative | Junction | 8 | 1 | TTG | TAA | TransCirc | No |
chr5|36961483|36986301|+|6|circRNA|NIPBL|NM_015384|5,6,7,8,9,10 | circNIPBL(5,6,7,8,9,10) | NIPBL | LCYKNCLWMMFRNLLKIERTNQEVPLNLSRINHQSQIKE | INHQSQIKE | No | Junction | Junction | 9 | 1 | TTG | TGA | TransCirc | No |
chr5|37006356|37010225|+|5|circRNA|NIPBL|NM_015384|17,18,19,20,21 | circNIPBL(17,18,19,20,21) | NIPBL | MENLCIFRWLQHWFYNLFSVWYTYHHQRRTLMQKKIQIKKITILKKKKGYGETLLWRELQNQRMLVLQLSTL | KGYGETLLWR | No | Alternative | Junction | 10 | 3 | ATG | TGA | TransCirc | No |
chr5|37173754|37175986|-|2|circRNA|C5orf42|ENST00000508244.5|31,30 | circC5orf42(31,30) | C5orf42 | MESMLLHNHLLQHLRRPREMNSRLSYQIVRSPLGRCCKMKCLN | RPREMNSR | No | Alternative | Alternative | 8 | 3 | ATG | TAG | NA | No |
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