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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|150618102|150618767|+|1|circRNA|SYNPO|NM_001166208|2 | circSYNPO(2) | SYNPO | LHPAKGGLPPAPSRSLMEATGVWLWKPRRAAVRRACRERWGLPTWKRMRGSAGVGTTLPAESPRGHRSCPKPWASNHPAAPERNKGRPSTTTGPARTGM | GGLPPAPSR | No | Alternative | Alternative | 9 | 2 | TTG | TAG | TransCirc | No |
chr5|151049823|151063747|-|6|circRNA|TNIP1|NM_001258455|7,6,5,4,3,2 | circTNIP1(7,6,5,4,3,2) | TNIP1 | LELKKLLMSNGNKEGASGRPGSPKMEGTGKKAVAGQQQGSFWKSPRWKRPGSGRRQRS | AVAGQQQGSFWKSPR | No | Junction | Junction | 15 | 2 | TTG | TAG | TransCirc | No |
chr5|151049823|151063747|-|6|circRNA|TNIP1|NM_001258455|7,6,5,4,3,2 | circTNIP1(7,6,5,4,3,2) | TNIP1 | MATKRVRLGGQAHRRWKGQARRQWLDSSRGAFGRVPDGSDQAPAEGRGASEGQRAAPTTFSLLGLLRPPG | GASEGQR | No | Alternative | Junction | 7 | 3 | ATG | TGA | TransCirc | No |
chr5|151049823|151063747|-|6|circRNA|TNIP1|NM_001258455|7,6,5,4,3,2 | circTNIP1(7,6,5,4,3,2) | TNIP1 | MATKRVRLGGQAHRRWKGQARRQWLDSSRGAFGRVPDGSDQAPAEGRGASEGQRAAPTTFSLLGLLRPPG | GASEGQRAAPTTFSLLGLLRPPG | No | Alternative | Junction | 23 | 3 | ATG | TGA | TransCirc | No |
chr5|151049823|151063747|-|6|circRNA|TNIP1|NM_001258455|7,6,5,4,3,2 | circTNIP1(7,6,5,4,3,2) | TNIP1 | MATKRVRLGGQAHRRWKGQARRQWLDSSRGAFGRVPDGSDQAPAEGRGASEGQRAAPTTFSLLGLLRPPG | LGGQAHR | No | Alternative | Junction | 7 | 3 | ATG | TGA | TransCirc | No |
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