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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|146233449|146271058|+|11|circRNA|RP11-449H3.3|ENST00000506502.2|7,8,9,10,11,12,13,14,15,16,17 | circRP11-449H3.3(7,8,9,10,11,12,13,14,15,16,17) | RP11-449H3.3 | LDLHKRLSSGEDTTELRKKLSQLQVEKEDFVYLVTFVSLIMEMIP | LSQLQVEK | No | Alternative | Junction | 8 | 1 | CTG | TAG | NA | No |
chr5|146233449|146271058|+|11|circRNA|RP11-449H3.3|ENST00000506502.2|7,8,9,10,11,12,13,14,15,16,17 | circRP11-449H3.3(7,8,9,10,11,12,13,14,15,16,17) | RP11-449H3.3 | LDLHKRLSSGEDTTELRKKLSQLQVEKEDFVYLVTFVSLIMEMIP | LSQLQVEKEDFVYLVTFVSLIMEMIP | No | Junction | Junction | 26 | 1 | CTG | TAG | NA | No |
chr5|146455055|146457335|+|2|circRNA|TCERG1|NM_001040006|2,3 | circTCERG1(2,3) | TCERG1 | MPPPMSSMPPPPGMMFPPGMPPVTAPGTPALPPTEEIWVENKTPDGKDGPTAGLEVPRSGSPTKCSDARPTTSDATSSTFWYDARPSSTTTAALWTSSF | TPDGKDGPTAGLEVPR | No | Junction | Junction | 16 | 1 | ATG | TGA | TransCirc | No |
chr5|146498686|146503305|+|1|ciRNA|TCERG1|NM_001040006|15 | ciTCERG1(15) | TCERG1 | LLIRIKGQLLKINEFQMSFDSSVRSGEELTTGEEN | IKGQLLK | No | Alternative | Alternative | 7 | 2 | TTG | TAG | NA | No |
chr5|149836262|149842377|+|3|circRNA|PPARGC1B|NM_001172698|7,8,9 | circPPARGC1B(7,8,9) | PPARGC1B | MSSRELKRRFEVFGEIEECEVLTRNRRTHPTHHTTVQAHRGGSLQTRHQA | GGSLQTR | No | Alternative | Junction | 7 | 1 | ATG | TAG | TransCirc | No |
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