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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|138381515|138420962|+|10|circRNA|KDM3B|ENST00000314358.9|6,7,8,9,10,11,12,13,14,15 | circKDM3B(6,7,8,9,10,11,12,13,14,15) | KDM3B | LPPTTKPKGLAFETSFTPGRENFLKPPWTQAYPFPRSSLHPQQVVRSSR | GLAFETSFTPGR | No | Alternative | Junction | 12 | 1 | CTG | TAG | TransCirc | No |
chr5|138391012|138393372|+|2|circRNA|KDM3B|ENST00000314358.9|8,9 | circKDM3B(8,9) | KDM3B | LAVALHKRHRKTLISPKTCFFNACPKLYLPVTTSLLFQRVWLMILLVGTHSNKALRA | LAVALHK | No | Alternative | Alternative | 7 | 3 | TTG | TGA | TransCirc | No |
chr5|138399859|138415239|+|2|circRNA|KDM3B|ENST00000314358.9|11,12 | circKDM3B(11,12) | KDM3B | LVEVCKGTVPRTRESHAHTNYSWHRESGMEASCAWCTGDV | LVEVCKGTVPR | No | Alternative | Junction | 11 | 2 | CTG | TGA | TransCirc | No |
chr5|138415131|138420962|+|4|circRNA|KDM3B|ENST00000314358.9|12,13,14,15 | circKDM3B(12,13,14,15) | KDM3B | LPPTTKPKGLAFETSFTPGRENFLKPPWTQAYPFPRSSLHPQQDRRDG | SSLHPQQDRR | No | Junction | Junction | 10 | 1 | CTG | TGA | TransCirc | No |
chr5|138424074|138430425|+|7|circRNA|KDM3B|ENST00000314358.9|16,17,18,19,20,21,22 | circKDM3B(16,17,18,19,20,21,22) | KDM3B | LIMTQFMTKVGTWTRPSVSDSMRSMACKAGLLCSS | AGLLCSS | No | Alternative | Alternative | 7 | 2 | CTG | TAG | TransCirc | No |
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