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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|1936686|2014642|-|5|circRNA|MAD1L1|NM_001013836|17,16,15,14,13 | circMAD1L1(17,16,15,14,13) | MAD1L1 | LHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTVPADLEAAAASLPSSKEVAGAGRYAGHPGVLRQRADPGRVLTPADAAHAGG | EVAGAGRYAGHPGVLR | No | Junction | Junction | 16 | 1 | CTG | TGA | TransCirc | No |
chr7|1980452|2014642|-|3|circRNA|MAD1L1|NM_001013836|15,14,13 | circMAD1L1(15,14,13) | MAD1L1 | LPNRASCSPGRRRTRSGAGRYAGHPGVLRQRADPGRVLTPADAAHAGG | ASCSPGR | No | Alternative | Junction | 7 | 2 | CTG | TGA | TransCirc | No |
chr7|2213211|2225550|-|7|circRNA|MAD1L1|NM_001013836|10,9,8,7,6,5,4 | circMAD1L1(10,9,8,7,6,5,4) | MAD1L1 | LLAKLQSWERLDQTMGLSISWRKEQSRSVRSPTSSRWSGRKCRWS | LDQTMGLSISWRK | No | Junction | Junction | 13 | 1 | CTG | TGA | TransCirc | No |
chr7|22145043|22167148|-|9|circRNA|RAPGEF5|ENST00000401957.6|10,9,8,7,6,5,4,3,2 | circRAPGEF5(10,9,8,7,6,5,4,3,2) | RAPGEF5 | LGGHGDSALQPAGQASAAGEKIHQNCGSRPSWMTSFSRTLSS | LGGHGDSALQPAGQASAAGEK | No | Alternative | Junction | 21 | 3 | TTG | TGA | NA | No |
chr7|22145043|22167148|-|9|circRNA|RAPGEF5|ENST00000401957.6|10,9,8,7,6,5,4,3,2 | circRAPGEF5(10,9,8,7,6,5,4,3,2) | RAPGEF5 | LQISAFCSRDAMRSSFGWPRRFCSAASWASECSW | DAMRSSFGWPR | No | Alternative | Alternative | 11 | 2 | CTG | TGA | TransCirc | No |
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