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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|1324854|1325750|-|1|ciRNA|CLPTM1L|ENST00000320895.9|10 | ciCLPTM1L(10) | CLPTM1L | MAEPQASLKSVILPPVQRVRWPSADESLRASVRGASVVEAALVSDRSHSLRLRIPRSYT | GASVVEAALVSDR | No | Alternative | Alternative | 13 | 1 | ATG | TAG | NA | No |
chr5|1324854|1325750|-|1|ciRNA|CLPTM1L|ENST00000320895.9|10 | ciCLPTM1L(10) | CLPTM1L | MAEPQASLKSVILPPVQRVRWPSADESLRASVRGASVVEAALVSDRSHSLRLRIPRSYT | MAEPQASLK | No | Alternative | Alternative | 9 | 1 | ATG | TAG | NA | No |
chr5|1324854|1325750|-|1|ciRNA|CLPTM1L|ENST00000320895.9|10 | ciCLPTM1L(10) | CLPTM1L | MAEPQASLKSVILPPVQRVRWPSADESLRASVRGASVVEAALVSDRSHSLRLRIPRSYT | MAEPQASLKSVILPPVQR | No | Alternative | Alternative | 18 | 1 | ATG | TAG | NA | No |
chr5|132823249|132826182|-|6|circRNA|SHROOM1|ENST00000378679.7|9,8,7,6,5,4 | circSHROOM1(9,8,7,6,5,4) | SHROOM1 | LAFCCCWAVAWRACAAPWPGRPQTATLMSRTHAATQPQHSSAQPWRPWDLGATAPPRPRPLAAWTCGICPCARTRPTALSPQPPAAPSRARSRRGQTSFLT | TRPTALSPQPPAAPSRAR | No | Alternative | Junction | 18 | 2 | TTG | TAG | NA | No |
chr5|132823249|132826182|-|6|circRNA|SHROOM1|ENST00000378679.7|9,8,7,6,5,4 | circSHROOM1(9,8,7,6,5,4) | SHROOM1 | LCPSGAGAVQPVHGRPRARAWPSAAAGQSPGARAPRPGPGGLRQRP | APRPGPGGLR | No | Alternative | Alternative | 10 | 3 | CTG | TGA | NA | No |
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