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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|124701013|124745172|-|2|circRNA|ZNF608|ENST00000509799.5|3,2 | circZNF608(3,2) | ZNF608 | LPPPRGQAPVGKAKRRSQVKARAAEAPSGIRMRGNPGRTSTTCFRATRMAVAARPLPGGTSMALGPRAMEVARAPSTAGALGVAASPLQGKLAKVPRIQGSWETLCW | ARAAEAPSGIR | No | Alternative | Alternative | 11 | 3 | CTG | TAA | TransCirc | No |
chr5|124701013|124745172|-|2|circRNA|ZNF608|ENST00000509799.5|3,2 | circZNF608(3,2) | ZNF608 | LPPPRGQAPVGKAKRRSQVKARAAEAPSGIRMRGNPGRTSTTCFRATRMAVAARPLPGGTSMALGPRAMEVARAPSTAGALGVAASPLQGKLAKVPRIQGSWETLCW | GQAPVGK | No | Alternative | Alternative | 7 | 3 | CTG | TAA | TransCirc | No |
chr5|124701013|124745172|-|2|circRNA|ZNF608|ENST00000509799.5|3,2 | circZNF608(3,2) | ZNF608 | LPPPRGQAPVGKAKRRSQVKARAAEAPSGIRMRGNPGRTSTTCFRATRMAVAARPLPGGTSMALGPRAMEVARAPSTAGALGVAASPLQGKLAKVPRIQGSWETLCW | MAVAARPLPGGTSMALGPRAMEVAR | No | Alternative | Alternative | 25 | 3 | CTG | TAA | TransCirc | No |
chr5|128158052|128161800|+|2|circRNA|SLC12A2|ENST00000262461.6|16,17 | circSLC12A2(16,17) | SLC12A2 | MKEMSIDQAKYQRWLIKNKMKAFYAPVHADDLREGAQYLMQATVSCYDRCSKLTSSFTSSCS | AFYAPVHADDLREGAQYLMQATVSCYDR | No | Junction | Junction | 28 | 1 | ATG | TGA | NA | No |
chr5|128158052|128161800|+|2|circRNA|SLC12A2|ENST00000262461.6|16,17 | circSLC12A2(16,17) | SLC12A2 | MKEMSIDQAKYQRWLIKNKMKAFYAPVHADDLREGAQYLMQATVSCYDRCSKLTSSFTSSCS | EGAQYLMQATVSCYDR | No | Junction | Junction | 16 | 1 | ATG | TGA | NA | No |
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