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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|122422867|122432082|+|2|circRNA|SNCAIP|ENST00000509154.6|5,6 | circSNCAIP(5,6) | SNCAIP | MKVMTKRTRKWLSTRKGVSLTWAPSLRSLALEMEWAAHQVRALSPAHRWVNWSTTTSTWMRFWMCLILNPVSSLPLLPR | GVSLTWAPSLR | No | Alternative | Alternative | 11 | 1 | ATG | TGA | NA | No |
chr5|122422867|122432082|+|2|circRNA|SNCAIP|ENST00000509154.6|5,6 | circSNCAIP(5,6) | SNCAIP | MKVMTKRTRKWLSTRKGVSLTWAPSLRSLALEMEWAAHQVRALSPAHRWVNWSTTTSTWMRFWMCLILNPVSSLPLLPR | KGVSLTWAPSLR | No | Alternative | Alternative | 12 | 1 | ATG | TGA | NA | No |
chr5|123545416|123591414|+|9|circRNA|CSNK1G3|ENST00000345990.8|2,3,4,5,6,7,8,9,10 | circCSNK1G3(2,3,4,5,6,7,8,9,10) | CSNK1G3 | LLCHQTEKHINTEIRCNNPKTSSLSISAHIIEKIILKTCFAEKTLRKILRMG | HINTEIR | No | Alternative | Junction | 7 | 2 | CTG | TGA | TransCirc | No |
chr5|123557494|123575963|+|3|circRNA|CSNK1G3|ENST00000345990.8|4,5,6 | circCSNK1G3(4,5,6) | CSNK1G3 | MEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKGAHEIKSTTATFGIQIL | YMSINTHLGKGAHEIK | No | Junction | Junction | 16 | 1 | ATG | TAA | TransCirc | No |
chr5|124639132|124644661|-|4|circRNA|ZNF608|ENST00000504926.5|8,7,6,5 | circZNF608(8,7,6,5) | ZNF608 | LLPLLPLSRWLPRHLHLECFLDKEGPRFKNMASLCIPAQISGSAKVRRT | FKNMASLCIPAQISGSAK | No | Alternative | Junction | 18 | 1 | CTG | TGA | TransCirc | No |
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